1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcggaacttcgatcttaaattttgcttcattttgcttcattttgcttcaccgtgtcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCAGCCACGAACCAAGCAATCCCCGCGAAACACAA
species | Selaginella moellendorffii |
transcript | EFJ12681 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAG GTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCEST: gi|169087397|gb|FE492200.1|FE492200
genomic: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAGgtcggaactt ... tcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGC
EST: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAG GTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCEST: gi|169030830|gb|FE436811.1|FE436811
genomic: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAGgtcggaactt ... tcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGC
EST: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAG GTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCEST: gi|169055815|gb|FE466707.1|FE466707
genomic: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAGgtcggaactt ... tcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGC
EST: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAG GTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCEST: gi|169027755|gb|FE434567.1|FE434567
genomic: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAGgtcggaactt ... tcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGC
EST: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAG GTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCEST: gi|169030052|gb|FE440518.1|FE440518
genomic: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAGgtcggaactt ... tcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGC
EST: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAG GTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGC
genomic: GGGGTGGATGCACTAACTTTAGCCGGATCACTCGATTCATTCACCAACAGgtcggaactt ... tcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGC
cgatcttaaattttgcttcattttgcttcattttgcttcaccgtgtcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCAGCCACGAACCAAGCAATCCCCGCGAAACACAA
ttaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggaacttcgatcttaaattttgcttcattttgcttcattttgcttcaccgtgtcaaacgtagGTGCGGCTAATTGACTTCTCCCCATCCGAAAAGTTCCTCGTAACGTACAGCAGCCACGAACCAAGCAATCCCCGCGAAACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA