1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgcatctcgtatgtggtttgtaattttaatggctgctgcttcttttcagCTCTACGAGAAGCTGCATGACTATGTCACGGATTTCGAGAAGGAGGAGCTAACAGCAAAGCTCCAGCAAACAGAGGACTGGCTGTACGAGGAAGGCGAGG
species | Selaginella moellendorffii |
transcript | EFJ12319 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGACAGAAAGAATGCAGTGGAAGCCTACGTCTATGACATGCGGAACAAG CTCTACGAGAAGCTGCATGACTATGTCACGGATTTCGAEST: gi|169048844|gb|FE456637.1|FE456637
genomic: AAGACAGAAAGAATGCAGTGGAAGCCTACGTCTATGACATGCGGAACAAGgtttgcatct ... ttcttttcagCTCTACGAGAAGCTGCATGACTATGTCACGGATTTCGA
EST: AAGACAGAAAGAATGCAGTGGAAGCCTACGTCTATGACATGCGGAACAAG CTCTACGAGAAGCTGCATGACTATGTCACGGATTTCGAGAAGGAGGAGCTA
genomic: AAGACAGAAAGAATGCAGTGGAAGCCTACGTCTATGACATGCGGAACAAGgtttgcatct ... ttcttttcagCTCTACGAGAAGCTGCATGACTATGTCACGGATTTCGAGAAGGAGGAGCTA
gtttgcatctcgtatgtggtttgtaattttaatggctgctgcttcttttcagCTCTACGAGAAGCTGCATGACTATGTCACGGATTTCGAGAAGGAGGAGCTAACAGCAAAGCTCCAGCAAACAGAGGACTGGCTGTACGAGGAAGGCGAGG
ttttaat putative branch site (score: 24)
ctgctgcttcttttc putative PPT
tttgtaattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcatctcgtatgtggtttgtaattttaatggctgctgcttcttttcagCTCTACGAGAAGCTGCATGACTATGTCACGGATTTCGAGAAGGAGGAGCTAACAGCAAAGCTCCAGCAAACAGAGGACTGGCTGTACGAGGAAGGCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA