Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcttgttcattactttttttgtgcgtctattcaccatgctgttattcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGCATTGCACCGGGACGATAGATACTTATCTGAGCCGGCTCTGGAAACGGTG

Basic information

species Selaginella moellendorffii
transcript EFJ11673
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169083495|gb|FE491926.1|FE491926
EST:     ACTCACGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGC                         GCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
genomic: ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGCgtaggcttgt ... ttcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
EST: gi|169024779|gb|FE435471.1|FE435471
EST:     ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGC                         GCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
genomic: ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGCgtaggcttgt ... ttcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
EST: gi|169038310|gb|FE445309.1|FE445309
EST:     ACTCACGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGC                         GCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
genomic: ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGCgtaggcttgt ... ttcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
EST: gi|169070711|gb|FE477310.1|FE477310
EST:     ACTCACGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGC                         GCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
genomic: ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGCgtaggcttgt ... ttcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
EST: gi|169093397|gb|FE492701.1|FE492701
EST:     ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGC                         GCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
genomic: ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGCgtaggcttgt ... ttcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
EST: gi|169092638|gb|FE493658.1|FE493658
EST:     ACTCACGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGC                         GCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC
genomic: ACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGCgtaggcttgt ... ttcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 74

CGCGGAAATTTTTCATCTATGTGCAGGACTATAACGAAGCGGATCCAAGGACTCAAGACGGCATGGATCTCAGTAGAGTAACGACCAAGGAGTTGTTCGCgtaggcttgt ... ttcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGCATTGCACCGGGACGATAGATACTTATCTGAGCCGGCTCTGGAAACGGTG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttgttcattactttttttgtgcgtctattcaccatgctgttattcttcgtagGCACTTTGGACTTGACGATAACACCATCGATTTTATTGGCCACTCACTGGCATTGCACCGGGACGATAGATACTTATCTGAGCCGGCTCTGGAAACGGTG
                                          ttattcttc  CT-rich tract
      ttcattacttttttt  TA-rich tract