1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtaagccagcagcaaagttcctcttttttctagacgattgttcttacggcttctttctcttgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTGCAAGAACTCCACCAACATCGAAGTAGTCATCGAGTGGCTCGTCAAGCAC
species | Selaginella moellendorffii |
transcript | EFJ11035 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGATTGATAAGCCGGATCATCTCTCCAAGCAGGCTTTGATCGATCAAAT GAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTGEST: gi|169049760|gb|FE458827.1|FE458827
genomic: AAGATTGATAAGCCGGATCATCTCTCCAAGCAGGCTTTGATCGATCAAATgtgagtaagc ... tctcttgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTG
EST: AAGATTGATAAGCCGGATCATCTCTCCAAGCAGGCGTTGATCGATCAAAT GAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTGEST: gi|169049759|gb|FE458826.1|FE458826
genomic: AAGATTGATAAGCCGGATCATCTCTCCAAGCAGGCTTTGATCGATCAAATgtgagtaagc ... tctcttgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTG
EST: AAGATTGATAAGCCGGATCATCTCTCCAAGCAGGCGTTGATCGATCAAAT GAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTG
genomic: AAGATTGATAAGCCGGATCATCTCTCCAAGCAGGCTTTGATCGATCAAATgtgagtaagc ... tctcttgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTG
agcaaagttcctcttttttctagacgattgttcttacggcttctttctcttgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTGCAAGAACTCCACCAACATCGAAGTAGTCATCGAGTGGCTCGTCAAGCAC
ttcttac putative branch site (score: 27)
ttcttacggcttcttt CT-rich tract
ttttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaagccagcagcaaagttcctcttttttctagacgattgttcttacggcttctttctcttgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTGCAAGAACTCCACCAACATCGAAGTAGTCATCGAGTGGCTCGTCAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC