1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtctcgtctatttgattcatgcaagcattactttcttgttccacatccagGACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCTCCATTTGGTCATGCATCTCAG
species | Selaginella moellendorffii |
transcript | EFJ11004 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTATGGGTGCTCTCTTGTTTCTCTTCTCGGCACTGCTATCAAGGGGCCTG GACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCTEST: gi|169095343|gb|FE499412.1|FE499412
genomic: GTATGGGTGCTCTCTTGTTTCTCTTCTCGGCACTGCTATCAAGGGGCCTGgtatgtctcg ... ccacatccagGACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCT
EST: GTATGGGTGCTCTCTTGTTTCTCTTCTCGGCACTGCTATCAAGGGGCCTG GACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCTEST: gi|169086797|gb|FE494122.1|FE494122
genomic: GTATGGGTGCTCTCTTGTTTCTCTTCTCGGCACTGCTATCAAGGGGCCTGgtatgtctcg ... ccacatccagGACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCT
EST: GTATGGGTGCTCTCTTGTTTCTCTTCTCGGCACTGCTATCAAGGGGCCTG GACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTCACTCCT
genomic: GTATGGGTGCTCTCTTGTTTCTCTTCTCGGCACTGCTATCAAGGGGCCTGgtatgtctcg ... ccacatccagGACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCT
gtatgtctcgtctatttgattcatgcaagcattactttcttgttccacatccagGACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCTCCATTTGGTCATGCATCTCAG
atttgat putative branch site (score: 14)
ttactttcttgttcc putative PPT
tatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctcgtctatttgattcatgcaagcattactttcttgttccacatccagGACGCTGTCCAGTCGGACCGGGATGATCCAGTTCAACCTCTGGTTACTCCTCCATTTGGTCATGCATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC