1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcccatagattcaaagtttttgtgctcgagttttcccagacataattttgatgatcttccatttcagGAGAAGGGTGCCAACGTGACTGTAAATTCACTTCATCCTGGAACTATCAAGACGAAACTTGGAAGAGATTTCAATCAGACTTCAGCTA
species | Selaginella moellendorffii |
transcript | EFJ09306 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAG GAGAAGGGTGCCAACGTG-CTTGTAAATTCACTTCATCCTGGAACTATCAAEST: gi|169103892|gb|FE508376.1|FE508376
genomic: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAGgtgcccatag ... tccatttcagGAGAAGGGTGCCAACGTGACT-GTAAATTCACTTCATCCTGGAACTATCAA
EST: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAG GAGAAGGGTGCCAACGTGACTEST: gi|169103891|gb|FE508375.1|FE508375
genomic: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAGgtgcccatag ... tccatttcagGAGAAGGGTGCCAACGTGACT
EST: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAG GAGAAGGGTGCCAACGTGACTGTAAATTCACTTCATCCTGGAACTATCAAGEST: gi|169113028|gb|FE514884.1|FE514884
genomic: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAGgtgcccatag ... tccatttcagGAGAAGGGTGCCAACGTGACTGTAAATTCACTTCATCCTGGAACTATCAAG
EST: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAG GAGAAGGGTGCCAACGTG-CTTGTAAATTCACTTCATCCTGGAACTATNCA
genomic: CCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAGgtgcccatag ... tccatttcagGAGAAGGGTGCCAACGTGACT-GTAAATTCACTTCATCCTGGAACTAT-CA
aaagtttttgtgctcgagttttcccagacataattttgatgatcttccatttcagGAGAAGGGTGCCAACGTGACTGTAAATTCACTTCATCCTGGAACTATCAAGACGAAACTTGGAAGAGATTTCAATCAGACTTCAGCTA
ttttgat putative branch site (score: 50)
tcttccatttc putative PPT
ataattttgatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcccatagattcaaagtttttgtgctcgagttttcccagacataattttgatgatcttccatttcagGAGAAGGGTGCCAACGTGACTGTAAATTCACTTCATCCTGGAACTATCAAGACGAAACTTGGAAGAGATTTCAATCAGACTTCAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT