1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtacacacgcacatatatacgtttggacttgggttacctgagcttagtaatctcatctaacattgtcgtctaagcggtgcagGTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAGAGTCCGATTAGCGGGCACACTTTGGACACTCTTGCTCAGGGAGATGCGT
species | Selaginella moellendorffii |
transcript | EFJ09297 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAA GTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAGEST: gi|169060107|gb|FE468093.1|FE468093
genomic: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAAgtacgtacac ... agcggtgcagGTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAG
EST: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAA GTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATANACTCCNAGEST: gi|169080517|gb|FE490509.1|FE490509
genomic: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAAgtacgtacac ... agcggtgcagGTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAG
EST: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAA GTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAGEST: gi|169060106|gb|FE468092.1|FE468092
genomic: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAAgtacgtacac ... agcggtgcagGTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAG
EST: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAA GTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAG
genomic: CCGGGTCGATGTTCTGCTCGACACAGGATTTGGACCTGGTGCGTTCAGAAgtacgtacac ... agcggtgcagGTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAG
cttgggttacctgagcttagtaatctcatctaacattgtcgtctaagcggtgcagGTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAGAGTCCGATTAGCGGGCACACTTTGGACACTCTTGCTCAGGGAGATGCGT
atctaac putative branch site (score: 6)
ttagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacacacgcacatatatacgtttggacttgggttacctgagcttagtaatctcatctaacattgtcgtctaagcggtgcagGTTGCATACCTAAGATATGGACTGACAGTACGCCACGTAATAAACTCCAAGAGTCCGATTAGCGGGCACACTTTGGACACTCTTGCTCAGGGAGATGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG