1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgccgtgctttttttcactttgattctgcttgtagtgaaccgcggtgtttcagGTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGCAACGTCCACGGCGTGAGTCCCAAGTTTTTGGAGATTGGGAAGAAGGTGA
species | Selaginella moellendorffii |
transcript | EFJ09054 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTACTNCA-GCACATCAATAATTGGGTGGTCGGCATCTACTGTAAACA-G GTATTGCGGCTCTCCGCTGCTACAEST: gi|169113829|gb|FE515377.1|FE515377
genomic: CTACT-CAAGCACATCAATAATTGGGTGGTCGGCATCTACTGTAA-CAAGgtacgccgtg ... ggtgtttcagGTATTGCGGCTCTCCGCTGCTACA
EST: TTCTACTCAAGCACATCAATAATTGGGTGGTCGGCATCTACTGTAACAAG GTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGCEST: gi|169113464|gb|FE514999.1|FE514999
genomic: TTCTACTCAAGCACATCAATAATTGGGTGGTCGGCATCTACTGTAACAAGgtacgccgtg ... ggtgtttcagGTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGC
EST: TTCTACTCAAGCACATCAATAATTGGGTGGTCGGCATCTACTGTAACAAG GTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGCEST: gi|169057283|gb|FE464209.1|FE464209
genomic: TTCTACTCAAGCACATCAATAATTGGGTGGTCGGCATCTACTGTAACAAGgtacgccgtg ... ggtgtttcagGTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGC
EST: TTCTACTCAAGCACATCAATAATTGGGTGGTCGGCATCTACTGTAACAAG GTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGC
genomic: TTCTACTCAAGCACATCAATAATTGGGTGGTCGGCATCTACTGTAACAAGgtacgccgtg ... ggtgtttcagGTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGC
tacgccgtgctttttttcactttgattctgcttgtagtgaaccgcggtgtttcagGTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGCAACGTCCACGGCGTGAGTCCCAAGTTTTTGGAGATTGGGAAGAAGGTGA
ctttgat putative branch site (score: 19)
tttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccgtgctttttttcactttgattctgcttgtagtgaaccgcggtgtttcagGTATTGCGGCTCTCCGCTGCTACACAAGAGCTGCCGAAATCGCAAGTTTGCAACGTCCACGGCGTGAGTCCCAAGTTTTTGGAGATTGGGAAGAAGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG