Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattttgtcacatgatcatcgggctcgaaatggttcacttgtaattctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGAGGCCAGCTTGGCTGCTTATGAAAAGAAGTATCCAACAGAAGCTGCGGAG

Basic information

species Selaginella moellendorffii
transcript EFJ07729
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169113502|gb|FE515037.1|FE515037
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169065822|gb|FE476232.1|FE476232
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169076855|gb|FE484754.1|FE484754
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169083698|gb|FE494872.1|FE494872
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169081273|gb|FE488756.1|FE488756
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169098253|gb|FE499908.1|FE499908
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169108568|gb|FE510783.1|FE510783
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169025972|gb|FE434441.1|FE434441
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169029029|gb|FE437532.1|FE437532
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169081523|gb|FE490241.1|FE490241
EST:     CGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: CGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169040813|gb|FE447864.1|FE447864
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169065061|gb|FE474509.1|FE474509
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGCAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169045804|gb|FE453896.1|FE453896
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169065649|gb|FE475890.1|FE475890
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169067032|gb|FE475996.1|FE475996
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169044178|gb|FE452180.1|FE452180
EST:     GAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: GAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169046767|gb|FE455847.1|FE455847
EST:     TTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: TTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169020443|gb|FE431690.1|FE431690
EST:     CGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: CGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169044587|gb|FE450626.1|FE450626
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169026511|gb|FE434785.1|FE434785
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169019094|gb|FE427903.1|FE427903
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169055062|gb|FE462964.1|FE462964
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169077753|gb|FE485431.1|FE485431
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169023097|gb|FE431619.1|FE431619
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169102485|gb|FE508542.1|FE508542
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169108850|gb|FE509167.1|FE509167
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169108428|gb|FE511995.1|FE511995
EST:     GGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: GGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169020097|gb|FE428510.1|FE428510
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169068642|gb|FE479726.1|FE479726
EST:     ACCTGTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: ACCT-TGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169082122|gb|FE490582.1|FE490582
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169063776|gb|FE472506.1|FE472506
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169115636|gb|FE517846.1|FE517846
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169080870|gb|FE486702.1|FE486702
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169104123|gb|FE507112.1|FE507112
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169057562|gb|FE464514.1|FE464514
EST:     AAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169071470|gb|FE479083.1|FE479083
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169067265|gb|FE473876.1|FE473876
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169027549|gb|FE433756.1|FE433756
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169114836|gb|FE516097.1|FE516097
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169055417|gb|FE463774.1|FE463774
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169098559|gb|FE497211.1|FE497211
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169026276|gb|FE432639.1|FE432639
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169050854|gb|FE459376.1|FE459376
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169114816|gb|FE516077.1|FE516077
EST:     CCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: CCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169075982|gb|FE480990.1|FE480990
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169083450|gb|FE495342.1|FE495342
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169079172|gb|FE488657.1|FE488657
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169042496|gb|FE450977.1|FE450977
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169026428|gb|FE434741.1|FE434741
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169067769|gb|FE473366.1|FE473366
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169043722|gb|FE453466.1|FE453466
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169024172|gb|FE432511.1|FE432511
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169088444|gb|FE495490.1|FE495490
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169097083|gb|FE497616.1|FE497616
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169049426|gb|FE458285.1|FE458285
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169081962|gb|FE487471.1|FE487471
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169022715|gb|FE428403.1|FE428403
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169045329|gb|FE453642.1|FE453642
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169083272|gb|FE494787.1|FE494787
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169018603|gb|FE427516.1|FE427516
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
EST: gi|169019106|gb|FE426771.1|FE426771
EST:     AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAG                         CCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA
genomic: AACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 235

GTGTCCACGGCAGTGCACTAGGCTCGAAGGAAGTTGATGCTACGAGAAAGAACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttg ... tctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGAGGCCAGCTTGGCTGCTTATGAAAAGAAGTATCCAACAGAAGCTGCGGAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttgtcacatgatcatcgggctcgaaatggttcacttgtaattctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGAGGCCAGCTTGGCTGCTTATGAAAAGAAGTATCCAACAGAAGCTGCGGAG
                                            ttctttttc  CT-rich tract
                                      ttgtaattcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatattttgtcacatgatcatcgggctcgaaatggttcacttgtaattctttttcagCCACTGGAGCAAGCACACCAAACTAGGAGCTGACTTGGAAGCTCAGTGGGAGGCCAGCTTGGCTGCTTATGAAAAGAAGTATCCAACAGAAGCTGCGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC