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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtgatagttttcattgaatttatattcttagttgtttggctggtttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ07541
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os03g56110.2 (Oryza sativa), 3'ss of exon 4
-------------------------------------gtatgttgtg-atagttttcattgaatttatattcttagttgtttggctggtttc--agGAACAGGAGA-----AAGCTAACCTCGCAACTGAT-ACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                       || || || |     || | |   || | | |    |   |||    ||||    | || |||||||     ||| | ||   |   | ||  || || || ||||||||||| || ||||||||||| ||||||||||| ||||| || ||||| ||  |  
gtacgcacgcatcacatcccgtttgatcaattcaaccacattttctgcaccaaattaactcgtttgaaaatgcgtgaaatttacggggttgtgtatgagcagGAGATGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGC

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os05g03884.1 (Oryza sativa), 3'ss of exon 4
-----------------------------gtatgttgtgatagttttcattgaatttatattcttagtt--gtttggctggtttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                               |        ||     || |||  |   | |||   ||    |||     |  |||||| |||| || |  |  || ||  |    ||||| ||||||| |||||| || ||||||||||| ||||||||||| ||| | || ||||| || || |
gtaatgtcgcgaaaacgccttttcgacacacaaaagcctctaacccacactgacctgggactctgtcttccaattgatctttcacagGAAGAGGATAAGGTGAGGCTGGCCGCGATGACTGGCCTCGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGAGGCACTGGAAGCCATCGG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os03g56140.2 (Oryza sativa), 3'ss of exon 4
--------------------------------------------------gtatgttgtgatagttttcattgaat----ttatattcttagttgtttggctg-gttt---cagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                                   |         | | | | ||  ||     | |  ||||  | |||     || || |   |||||   ||||||    |  || ||       || || || ||||||||||| || | ||||||||| ||||||||||| ||||| || ||||| ||  |  
gtacgcacgcatatatatgcttcccatttgatcaattcaaccacatttttctgcaccaaactcgatcttatgaaaatgcgtgaacttctcgggtgtacatgtgtgtatgagcagGAGGTGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAGCAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGC

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: LOC_Os03g51690.3 (Oryza sativa), 3'ss of exon 3
-----------------------------gtatgttgtgatagttttcatt-----gaatttatattcttagttgtttggctggttt-ca---gGAACAGGAGA-----AAGCTAAC-CTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                               || |  ||  || | ||        || ||  |  || | ||| | |  ||  ||| ||   ||| |||||||     ||| |  | || ||       || || || |||| |||||| || ||||||||||| ||||||||||| ||||| || ||||| || || |
tagttatctactaccatttctgtgctataaaatataatgcaagctatcgccatgcagatttcctgatcatggttatgtatctattttacatgtggagcagGAGAGTCAGAAGGTGGCACTGGCGGAGTCGACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCCTCCG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G087741_T01 (Zea mays), 3'ss of exon 4
-----------------------------------------gtatgttgtgatagttt--tcattgaatttatattcttagttgtttggctggtttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                            ||  |    | | |   || |||  | ||| ||| |  || |  |||| |  |||||  | || || |  |  |||||| |    || || ||||||| |||||| || ||||||||||| ||||||||||| ||| | |||||||| || || |
gtatgtaggcgctggccattttttttcaccaaacaatctgaacctgcaggtgcactgtgaccagtga-ctgataatctga--tgctgtgctgctgacagGAGGAAGACAAGGTGAGGCTCGCAGCAATGACCGGTCTCGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGAGGCATTGGAAGCCATCTG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM5G832409_T01 (Zea mays), 3'ss of exon 4
-----------------------------------------------------gtatgttgtgatagttttcattgaatttatattcttagttgtttggctggttt--cagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                                             |   |  | | || |   || |  ||  |  |   |  || |||   |||||  |||| || |  |  || ||  |    ||||| || |||| |||||| || ||||||||||| ||||||||| | ||||| |||||||| || || |
gtaacatgctcacagcacacacctgtgctgtgactgatctttcctcgctttgaacgaacaatcgaatctgtgatcggcattttgctcaga-ctaagtatcttgttcggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCATTGGAAGCCGTCGG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G028041_T01 (Zea mays), 3'ss of exon 4
----------------------------------------gtatgttgtgatagttttcattgaatttatattcttagttgtttg--gctggttt---cagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                         |    ||    ||  |  |||| ||  | ||| ||| |  |||   | | |||    |||||   ||||||   |   ||||||      || || || ||||||||||| || ||||||||||| ||||||||||| || || || ||||| || || |
ttccgtgacctttacgcgatgttaacactgcttcagaaccatgaactgaagcagaatgtattgtata-acattgttactgatttaatgtttgttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G452178_T01 (Zea mays), 3'ss of exon 4
----------------------------------------------------------------------gtatgt-tgtgatagttttcattgaatttatattcttagttgtttggctggt--ttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                                                      | | |   |||     |  | |||  |   | | |||   |||||| |||    | |||||   ||||||       || |||   |  ||||| || ||||||||||| || ||||||||||| ||||||||| | ||||| || ||||| || || |
gtgagagactaatctcccgtgcggccgtgccttaacacaatgctgacagatcgattaccgtactcatacagcacgcgcgtgccttgtgcccttggctcgctgtgcttg--tgtttgtctgaacatgcagGAGACGGAGAAGATCGCGCTGGCAGAGGCGACTGGCCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCGTCGG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA08G39170.1 (Glycine max), 3'ss of exon 4
------------------------------------gtatgttgtgatagttttcattgaatttatattcttagttgtttg------gctggt--ttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                    ||   |    ||| ||     |     || ||| | |   | |||      | || |  ||||||||   || ||   |   || || |     |||||  | ||||||||||||||||||||||||||||| || |||||||||||||| ||||| || || |
tatagtttattataggaaaaacattgcttgacatcagttaatgaatataattaagtctacgcctacattatcaaaagcttgtttcttgatgatctttcagGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGTCACTGGAAACCATCTG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA17G01370.1 (Glycine max), 3'ss of exon 4
------------------------------------gtatgttgtgatagttttcattgaatttatattcttagttgtt--tggctggtttcagGAACAGGAG-----AAAGCTAAC-CTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                      ||||| ||  |||||| |  | |   || | |   ||| |   ||  |   | ||  |||||||       |||||| | || |||      || || || || ||||||||||||||||||||||||||||| || |||||||| || ||||| |||||||
atattataatagcaataatttttcggtatataagaaacatgttatggaagtttttaggggaacaatttacaaggttttacatgattttatgcattaacagGAATCTCAGAAGCTAGCTCTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAAAGAAAGCGGCACTGGAAGCCTTCAG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA02G04190.1 (Glycine max), 3'ss of exon 4
--------------------------------------------gtatgttgtgatagttttcattgaatttatattcttagttgtttggctggtttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                             |||  | |  |   | | ||| || || |||| |   ||  |||      |  |||||   || ||   | | || || |     || || || |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || ||||
aaagataagcataaaaaatgttggttgtatgaattattatacaaatatcatttttttaatattattaaacttgtattttgttttacttgatcatctatagGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTGGACCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCAG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA18G20460.1 (Glycine max), 3'ss of exon 1
------------------------gtatgttgtgatagttttcattgaatt------------tatattcttagttgtttg------gctggt--ttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                         ||| |  ||| |    | | |||| |            || ||| | |   | |||      | || |  ||||||||   || ||   |   || || |     |||||| | ||||||||||||||||||||||||||||| || |||||||||||  | ||||| || || |
tattttctcatggattacttgaaaatatttcttgacatcagttagtgaactgaagtcttagcctacattatcaaaagcttgttccttgttgatctttcagGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGATTAGACCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGCTACTGGAAACCATCTG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA01G03450.1 (Glycine max), 3'ss of exon 5
---------------------------------------------gtatgttgtgatagttttcattgaatttatattcttagttgtttggctggtttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                               || || |  |  | || ||| || || |||| |   ||  |||      |  |||||   || ||   | | || || |     || || || |||||||||||||||||||| |||||||| ||||| ||||| || |||||||| || || |
tgaaaaaaatgtactaaaaaattgttggatgaattattttacagataatattttttttatatt-attaaacttgtattttgttttacttgatcatgtatagGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATAAACCAAAGAAAACGACATTGGAAACCATCCG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA14G05150.1 (Glycine max), 3'ss of exon 5
-----------------------------------------gtatgttgtgatagttttcattgaatttatattcttagt-tgtttggctggt--ttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                          |||    |||    | | ||   ||    ||  | | | || |||| |     |  |||||    | ||       || |||      || || || || | ||| ||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |
tgtgcattaattaattcataagttttgtttactatttatatatatccgatgactaatcttatattatggcaatggtgaatgtgcttggataaacatgtagGAATCTCAAAAGCAGGCACTTGCAGAATCCACAGGCCTAGATCTGAAACAAATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA07G39350.1 (Glycine max), 3'ss of exon 3
-----------------------------gtatgttgtgatagttttcattg----aatttatat--tcttagttgtttggctggttt---cagGAACAGGAG-----AAAGCTAAC-CTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                               ||||| ||   ||||| |  |    |||||| |   |  ||  || ||   |  |||   ||  |||||||       |||||  | || |||      || || || || ||||||||||||||||||||||||||||| || || ||| | || ||||| |||||||
gacaacaattatttttcggtatatatgaaacatgttatggctgtttttaggggaataatttacaagattctacatgcttaattaatttatgcattaacagGAATCTCAGAAGCTGGCTCTTGCAGAGTCAACAGGCCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAAAGGAAGAGGCACTGGAAGCCTTCAG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv14s0060g01180.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------gtatgttgtgatagttttcatt---gaatttatattcttagttgtttggctg-gtttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                         | |   | || |   |||||||   | |    |||    |   | |||     | | |||||| | ||||||   || ||  ||   | ||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| |||||||| || ||||
aaaagttcatattggagttgtatttagaactgctatcgctgggacact-tgtttactttcatttctggacacgtatctgaaaaggattgatgatgatacagGAAGATGAGAAATTGAAGCTATCAGAGGTTACTGGACTAGACCAGAAGCAGATTAACAACTGGTTCATAAACCAGAGGAAGCGGCATTGGAAACCATCAG

upper sequence: EFJ07541 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv01s0127g00210.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------gtatgttgtgatagttttcattgaatttatattcttagttgtttggctggt-------ttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
                                     ||  |     ||| | ||   ||| | | |   | ||    |||  ||  |       | ||||||   || |||  |   || ||       || || || |||||||||||||||||||| |||||||| || ||  ||||||| || ||||| || ||||
gtaagtctgcactttgtgttttcatttcctttatagggtgggaatgcatactattttctgagtctttgaccataccgctttttcttatataataatccagGAAGCTGATAAAATTGCACTTGCTGAAACAACGGGTCTGGACCAGAAGCAAATTAACAATTGGTTTATAAATCAACGAAAGCGGCACTGGAAACCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttgtgatagttttcattgaatttatattcttagttgtttggctggtttcagGAACAGGAGAAAGCTAACCTCGCAACTGATACTGGACTCGACCAGAAGCAAATTAACAACTGGTTTATCAACCAGAGAAAGCGTCATTGGAATCCTTCAG
         atagttttcattgaat  TA-rich tract