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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacaataagttctttcgtaagctttgtaaatctttgttaacgtaaactttgtgcaagCAGGAGAATCGTGGGCATTGCACACGTAGAGGATTTCGAATCGATCGAAAACCCAGAGTTGCGGTCACAATGTGAAAGACGCGCGTTAAATTTTGCAAAA

Basic information

species Selaginella moellendorffii
transcript EFJ06533
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169029602|gb|FE438950.1|FE438950
EST:     AGGGACTTGTTCGAAGATACGCTGGGTTTTGCCGGGGCAAAGATGATAAG                         --G-AGAATCGTGGGCATTGCACACGTGGAAGATTTCGAATCGATCGAAAA
genomic: AGGGACTTGTTCGAAGATGCGCTGGGTTTTGCCGGGGCAAAGATGATAAGgtaacaacaa ... tttgtgcaagCAGGAGAATCGTGGGCATTGCACACGTAGAGGATTTCGAATCGATCGAAAA
EST: gi|169067162|gb|FE474930.1|FE474930
EST:     AGGGACTTGTTCGAAGATACGCTGGGTTTTGCCGGGGCAAAGATGATAAG                         --G-AGAATCGTGGGCATTGCACACGTGGAAGATTTCGAATCGATCGAAAA
genomic: AGGGACTTGTTCGAAGATGCGCTGGGTTTTGCCGGGGCAAAGATGATAAGgtaacaacaa ... tttgtgcaagCAGGAGAATCGTGGGCATTGCACACGTAGAGGATTTCGAATCGATCGAAAA
EST: gi|169068749|gb|FE478442.1|FE478442
EST:     AGGGACTTGTTCGAAGATACGCTGGGTTTTGCCGGGGCAAAGATGATAAG                         --G-AGAATCGTGGGCATTGCACACGTGGAAGATTTCGAATCGATCGAAAA
genomic: AGGGACTTGTTCGAAGATGCGCTGGGTTTTGCCGGGGCAAAGATGATAAGgtaacaacaa ... tttgtgcaagCAGGAGAATCGTGGGCATTGCACACGTAGAGGATTTCGAATCGATCGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caataagttctttcgtaagctttgtaaatctttgttaacgtaaactttgtgcaagCAGGAGAATCGTGGGCATTGCACACGTAGAGGATTTCGAATCGATCGAAAACCCAGAGTTGCGGTCACAATGTGAAAGACGCGCGTTAAATTTTGCAAAA
                                tgttaac  putative branch site (score: 2)
                        taaatctttgttaa  TA-rich tract