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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatcaattctagtgtttttctttcttttcttgctctctaaacgaagtttttgtgtagATCTTATGGTCCAGTCCAGGATGTTCGAATTCCATACCAGCAGAAGCGAATGTTTGGATTCGTCACCTTCATCTATCCCGAGACTGTCAAGGCGATACTG

Basic information

species Selaginella moellendorffii
transcript EFJ06262
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06262 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S31_251V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------gtagatcaattctagtgtttttctttcttttcttgctctctaa---acgaagtttttgtgtagATCTTATGGTCCAGTCCAGGATGTTCGAATTCCATACCAGCAGAAGCGAATGTTTGGATTCGTCACCTTCATCTATCCCGAGACTGTCAAGGCGATACTG
                                    |  |  | ||  ||    | |  |           | ||| |     |  |  |   || ||  |||| ||||||||||| |||||||| || || || ||||||||||| |||||||| || || || ||  | ||| | || ||||| || || ||  ||
gtcaacggtgacagccttactgtactttttgcatattgaaatacttggagatcctcttatgaccaatcaattttctcatttgtgcgggatgaatgcagGGCTTACGGTCCAGTCCAAGATGTTCGGATCCCCTATCAGCAGAAGCGGATGTTTGGTTTTGTGACTTTTGTATATTCAGAAACTGTTAAAGCAATTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattctagtgtttttctttcttttcttgctctctaaacgaagtttttgtgtagATCTTATGGTCCAGTCCAGGATGTTCGAATTCCATACCAGCAGAAGCGAATGTTTGGATTCGTCACCTTCATCTATCCCGAGACTGTCAAGGCGATACTG
                                ctctaaa  putative branch site (score: 3)
                                            tttttgt  putative PPT
            tttttctttctttt  TA-rich tract