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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttttaacgttaatttttctgtgcgtcttatccgtgctactaagGTACAGTTGTGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTC

Basic information

species Selaginella moellendorffii
transcript EFJ05569
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05569 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S101_210V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------gtaa-tgtttttaacgttaatttttctgtgcgtcttatccgtgctac-taagGTACAGTTGTGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTC------
                                            |  ||     | |  ||  | || || |    |||   || ||   || |  |||| | ||||| ||||||||||| |||||||| || |||||||| |||||||| |  ||  |||   |||||||||| ||||| ||||| |||||||      
catgaattcttacttacaaatactcaaattcctcttaactacacagctgcacagatctgtagatattgtgagtcgattaatggttctgtgtatgtgacagCTTTGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgtttttaacgttaatttttctgtgcgtcttatccgtgctactaagGTACAGTTGTGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTC
               taatgtttttaacgtt  TA-rich tract