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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttgaatgtaacttatcttactagtctttatgctcgttccagGACTATCGTTCGCATATCAATTGCTGTATTTACTCGAGGCAACGCGGTTCTATTCTCCAGCCTTGTACTTGACCGGAGTCTATGTCCGCCGTGCATCCGG

Basic information

species Selaginella moellendorffii
transcript EFJ38878
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056506|gb|FE464914.1|FE464914
EST:     GGTTGCTGTTCTCACGTACTCCTTTCCTTGGATTCACGCCACTCACGAAG                         GACTATCGTTCGCATATCAATTGCTGTATTTACTCGAGGCAACGCGGTTCT
genomic: GGTTGCTTTTCTCACGTACTCCTTTCCTTGGATTCACGCCACTCACGAAGgtatgttttg ... ctcgttccagGACTATCGTTCGCATATCAATTGCTGTATTTACTCGAGGCAACGCGGTTCT
EST: gi|169056507|gb|FE464915.1|FE464915
EST:     GGTTGCTGTTCTCACGTACTCCTTTCCTTGGATTCACGCCACTCACGAAG                         GACTATCGTTCGCATATCAATTGCTGTATTTACTCGAGGCAACGCGGTTCT
genomic: GGTTGCTTTTCTCACGTACTCCTTTCCTTGGATTCACGCCACTCACGAAGgtatgttttg ... ctcgttccagGACTATCGTTCGCATATCAATTGCTGTATTTACTCGAGGCAACGCGGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgttttgaatgtaacttatcttactagtctttatgctcgttccagGACTATCGTTCGCATATCAATTGCTGTATTTACTCGAGGCAACGCGGTTCTATTCTCCAGCCTTGTACTTGACCGGAGTCTATGTCCGCCGTGCATCCGG
                           atcttac  putative branch site (score: 3)
                                             ctcgttcc  putative PPT
        tatgtttt  TA-rich tract