1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtgaatgaacatgctttcaagttaccactttttattgttttgttttccattgcagAAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCA
species | Selaginella moellendorffii |
transcript | EFJ38753 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACTGGACAAGACCTTCGAAGAGCGAGCCGCGCTGAATGAAAATATTGTG AAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACEST: gi|169066977|gb|FE475967.1|FE475967
genomic: CACTGGACAAGACCTTCGAAGAGCGAGCCGCGCTGAATGAAAATATTGTGgtgagtgaat ... tccattgcagAAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTAC
EST: AGAGCGAGCCGCGCTGAATGAAAATATTGTG AAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACEST: gi|169098029|gb|FE496863.1|FE496863
genomic: AGAGCGAGCCGCGCTGAATGAAAATATTGTGgtgagtgaat ... tccattgcagAAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTAC
EST: CACTGGACAAGACCTTCGAAGAGCGAGCCGCGCTGAATGAAAATATTGTG AAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTAC
genomic: CACTGGACAAGACCTTCGAAGAGCGAGCCGCGCTGAATGAAAATATTGTGgtgagtgaat ... tccattgcagAAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTAC
gtgaatgaacatgctttcaagttaccactttttattgttttgttttccattgcagAAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCA
ctttttattgttttgt CT-rich tract
tttttattgttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaatgaacatgctttcaagttaccactttttattgttttgttttccattgcagAAATCGATCAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA