1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagagatcaccacctggctccagtagaaccaagaaacgtgaaaagaagctatctttttgttcttatccctccgcggtttaactcacttcctgtccctaaacagCGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCTCTGTTCGTCTTCATCAATGGATGCGCGTGGCTCGTCTACGGCCTCCTCA
species | Selaginella moellendorffii |
transcript | EFJ37853 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGCGTGATCTTCACAACGGGGATGAACGTCGCTCCACTCTCTGTCATG CGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCTEST: gi|169088092|gb|FE496451.1|FE496451
genomic: TGTGCGTGATCTTCACAACGGGGATGAACGTCGCTCCACTCTCTGTCATGgtaagagatc ... ccctaaacagCGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCT
EST: TGTGCGTGATCTTCACAACGGGGATGAACGTCGCTCCACTCTCTGTCATG CGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCTEST: gi|169034514|gb|FE446433.1|FE446433
genomic: TGTGCGTGATCTTCACAACGGGGATGAACGTCGCTCCACTCTCTGTCATGgtaagagatc ... ccctaaacagCGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCT
EST: TGTGCGTGATCTTCACAACGGGGATGAACGTCGCTCCACTCTCTGTCATG CGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCT
genomic: TGTGCGTGATCTTCACAACGGGGATGAACGTCGCTCCACTCTCTGTCATGgtaagagatc ... ccctaaacagCGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCT
ctatctttttgttcttatccctccgcggtttaactcacttcctgtccctaaacagCGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCTCTGTTCGTCTTCATCAATGGATGCGCGTGGCTCGTCTACGGCCTCCTCA
aactcac putative branch site (score: 15)
ctcacttcctgtccct CT-rich tract
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagatcaccacctggctccagtagaaccaagaaacgtgaaaagaagctatctttttgttcttatccctccgcggtttaactcacttcctgtccctaaacagCGAATGGTAATCAGAACGAGAAGCGTGGAATTCATGCCTTTCTACCTCTCTCTGTTCGTCTTCATCAATGGATGCGCGTGGCTCGTCTACGGCCTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC