1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcgtctgagatcgatcgttttcttttttcgatagatctaaactcttcttaactagAACTTTTGTTGGGACGAACTTGTCACCGAAGTGGGAGAAATTCTTGTCGCCAAGTACTG
species | Selaginella moellendorffii |
transcript | EFJ37819 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCCCGATTGTCAACAAATATGCCTTCGTCTCGGCCTGACAGACTACAA AACTTTTGTTGGGACGAACTTGTCACCGAAGTGGGAGAAATTCTTGTCGCCEST: gi|169048266|gb|FE456253.1|FE456253
genomic: TCCCCCGATTGTCAACAAATATGCCTTCGTCTCGGCCTGACAGACTACAAgtaagcgtct ... tcttaactagAACTTTTGTTGGGACGAACTTGTCACCGAAGTGGGAGAAATTCTTGTCGCC
EST: TCCCCCGATTGTCAACAAATATGCCTTCGTCTCGGCCTGACAGACTACAA AACTTTTGTTGGGACGAACTTGTCACCGAAGTGGGAGAAATTCTTGTCGCC
genomic: TCCCCCGATTGTCAACAAATATGCCTTCGTCTCGGCCTGACAGACTACAAgtaagcgtct ... tcttaactagAACTTTTGTTGGGACGAACTTGTCACCGAAGTGGGAGAAATTCTTGTCGCC
gcgtctgagatcgatcgttttcttttttcgatagatctaaactcttcttaactagAACTTTTGTTGGGACGAACTTGTCACCGAAGTGGGAGAAATTCTTGTCGCCAAGTACTG
atctaaa putative branch site (score: 2)
ctcttctt CT-rich tract
ttttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtctgagatcgatcgttttcttttttcgatagatctaaactcttcttaactagAACTTTTGTTGGGACGAACTTGTCACCGAAGTGGGAGAAATTCTTGTCGCCAAGTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA