1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgaagtttttcgtaagttctactttatagtaacctcgtcttgttttacagGGGCTCAAAATGGGAATAGCACTCCCGTGGTTTTTGCTCAATATCAACGGGGCAACTGGAGGAATTATACTTCTAGGACTGGTCGGTTTTGGAATTTTGC
species | Selaginella moellendorffii |
transcript | EFJ37559 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGCTAGGGAGAATTTTGCGAAATGGGGGCATCCCGATGGCAGACAG GGGCTCAAAATGGGAATAGCACTCCCGTGGTTTTTGCTCAATATCAACGGGEST: gi|169020381|gb|FE431628.1|FE431628
genomic: CAGTTGCTAGGGAGAATTTTGCGAAATGGGGGCATCCCGATGGCAGACAGgttcgaagtt ... tgttttacagGGGCTCAAAATGGGAATAGCACTCCCGTGGTTTTTGCTCAATATCAACGGG
EST: CAGTTGCTAGGGAGAATTTTGCGAAATGGGGGCATCCCGATGGCAGACAG GGGCTCAAAATGGGAATAGCACTCCCGTGGTTTTTGCTCAATATCAACGGG
genomic: CAGTTGCTAGGGAGAATTTTGCGAAATGGGGGCATCCCGATGGCAGACAGgttcgaagtt ... tgttttacagGGGCTCAAAATGGGAATAGCACTCCCGTGGTTTTTGCTCAATATCAACGGG
gttcgaagtttttcgtaagttctactttatagtaacctcgtcttgttttacagGGGCTCAAAATGGGAATAGCACTCCCGTGGTTTTTGCTCAATATCAACGGGGCAACTGGAGGAATTATACTTCTAGGACTGGTCGGTTTTGGAATTTTGC
tagtaac putative branch site (score: 10)
cctcgtcttgtttt CT-rich tract
tttatagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgaagtttttcgtaagttctactttatagtaacctcgtcttgttttacagGGGCTCAAAATGGGAATAGCACTCCCGTGGTTTTTGCTCAATATCAACGGGGCAACTGGAGGAATTATACTTCTAGGACTGGTCGGTTTTGGAATTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA