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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggctgacgcgttaagcgtaacacacttacctcaacgtttccattttacagACTTGAAAACACATTGAACTATGGGCTTGAACGTGTCTGGATGATTGGCTACTTAAAGGGATCAAACAG

Basic information

species Selaginella moellendorffii
transcript EFJ36319
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169083104|gb|FE496400.1|FE496400
EST:     ACGGGATCAGAGGACGGCACGGTGCGGATCTGGCATACTACAACTTACAG                         ACTTGAAAACACATTGAACTATGGGCTTGAACGTGTCTGGATGATTGGCTA
genomic: ACGGGATCAGAGGACGGCACGGTGCGGATCTGGCATACTACAACTTACAGgtggctgacg ... cattttacagACTTGAAAACACATTGAACTATGGGCTTGAACGTGTCTGGATGATTGGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggctgacgcgttaagcgtaacacacttacctcaacgtttccattttacagACTTGAAAACACATTGAACTATGGGCTTGAACGTGTCTGGATGATTGGCTACTTAAAGGGATCAAACAG
                           cacttac  putative branch site (score: 2)
                                         tttccatttt  putative PPT
                                              attttaca  TA-rich tract