1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccactcattcccccttttggatcgatcaaactggacaaaatccttctcgagctttacgacatttttctccctcgttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGATCGCCGCGAACAACTACAGTGGATTGTGGGTTTACATTGTCGGCCCGACA
species | Selaginella moellendorffii |
transcript | EFJ36013 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGG GCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGATEST: gi|169040417|gb|FE448430.1|FE448430
genomic: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGGgtaagccact ... gttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGAT
EST: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGG GCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGATEST: gi|169102851|gb|FE508635.1|FE508635
genomic: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGGgtaagccact ... gttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGAT
EST: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGG GCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGATEST: gi|169054254|gb|FE463195.1|FE463195
genomic: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGGgtaagccact ... gttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGAT
EST: CAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCCATCT-CGCCGG GCCGATNTCGGGCGCGTCAATGAATCCAGCACGAAEST: gi|169039915|gb|FE447601.1|FE447601
genomic: CAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCC-ATCTTCGCCGGgtaagccact ... gttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAA
EST: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGG GCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGATEST: gi|169054253|gb|FE463194.1|FE463194
genomic: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGGgtaagccact ... gttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGAT
EST: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGG GCCGATTTCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGAT
genomic: GCAGGCCTCGCAATCGGTGCTACAGTGGGCTTGAATGCCATCTTCGCCGGgtaagccact ... gttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGAT
aactggacaaaatccttctcgagctttacgacatttttctccctcgttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGATCGCCGCGAACAACTACAGTGGATTGTGGGTTTACATTGTCGGCCCGACA
catttttctccctcgt CT-rich tract
acattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccactcattcccccttttggatcgatcaaactggacaaaatccttctcgagctttacgacatttttctccctcgttcgctcagGCCAATATCGGGCGCGTCAATGAATCCAGCACGAAGCTTGGGCCCCGCGATCGCCGCGAACAACTACAGTGGATTGTGGGTTTACATTGTCGGCCCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA