1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gccaagctcgctaagtaaaatacccctgttcatagaaaacgttttcactcttttctttatacgttcctctaaaagaaaaacgttatctttgtactctcagAACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAACAACTATCTCAACTATCACGAGAGAGTAATGCAGCTCGTCAAGATCGGTG
species | Selaginella moellendorffii |
transcript | EFJ35623 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTCCGCGAGGGCCCAGCTCTGGCAACTCTGGACGAGCTCGTTCAAAAT AACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAACEST: gi|169036547|gb|FE446510.1|FE446510
genomic: ATTTCCGCGAGGGCCCAGCTCTGGCAACTCTGGACGAGCTCGTTCAAAATgtaagccttc ... gtactctcagAACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAAC
EST: ATTTCCGCGAGGGCCCAGCTCTGGCAACTCTGGACGAGCTCGTTCAAAAT AACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAACEST: gi|169036546|gb|FE446509.1|FE446509
genomic: ATTTCCGCGAGGGCCCAGCTCTGGCAACTCTGGACGAGCTCGTTCAAAATgtaagccttc ... gtactctcagAACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAAC
EST: ATTTCCGCGAGGGCCCAGCTCTGGCAACTCTGGACGAGCTCGTTCAAAAT AACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAAC
genomic: ATTTCCGCGAGGGCCCAGCTCTGGCAACTCTGGACGAGCTCGTTCAAAATgtaagccttc ... gtactctcagAACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAAC
cactcttttctttatacgttcctctaaaagaaaaacgttatctttgtactctcagAACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAACAACTATCTCAACTATCACGAGAGAGTAATGCAGCTCGTCAAGATCGGTG
ctctaaa putative branch site (score: 14)
tctttgt putative PPT
ttttctttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccaagctcgctaagtaaaatacccctgttcatagaaaacgttttcactcttttctttatacgttcctctaaaagaaaaacgttatctttgtactctcagAACAAGAACCATGGCTTCTTCGATTTCATTTTTATTGATGCCGACAAGAACAACTATCTCAACTATCACGAGAGAGTAATGCAGCTCGTCAAGATCGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- caagctc
- - - - - - aagtaaa
- - - - - - - - - - - - - tgttcat
- - - - - - - - - - - - - - - - -agaaaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatctt