1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtttcattgtttttttggacgttctactgagatctaactgcttacctgtagGCTGGTTTGCCTTTGGTGCAACAGTATCTGTTTCAATTGGAACGGCTTGTCCGAGAGTATATCCCGAAACTTGGTGCTCATTTCGAAGAGGAAATGATAA
species | Selaginella moellendorffii |
transcript | EFJ35318 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCGCTGTTGAAGGGCGCAGTTCATGCGCCAATGGAAGGCCTTTACTTG GCTGGTTTGCCTTTGGTGCAACAGTATCTGTTTCAATTGGAACGGCTTGTCEST: gi|169080238|gb|FE489411.1|FE489411
genomic: TGGCGCTGTTGAAGGGCGCAGTTCATGCGCCAATGGAAGGCCTTTACTTGgtttgtttca ... ttacctgtagGCTGGTTTGCCTTTGGTGCAACAGTATCTGTTTCAATTGGAACGGCTTGTC
EST: TGGCGCTGTTGAAGGGCGCAGTTCATGCGCCAATGGAAGGCCTTTACTTG GCTGGTTTGCCTTTGGTGCAACAGTATCTGTTTCAATTGGAACGGCTTGTC
genomic: TGGCGCTGTTGAAGGGCGCAGTTCATGCGCCAATGGAAGGCCTTTACTTGgtttgtttca ... ttacctgtagGCTGGTTTGCCTTTGGTGCAACAGTATCTGTTTCAATTGGAACGGCTTGTC
gtttgtttcattgtttttttggacgttctactgagatctaactgcttacctgtagGCTGGTTTGCCTTTGGTGCAACAGTATCTGTTTCAATTGGAACGGCTTGTCCGAGAGTATATCCCGAAACTTGGTGCTCATTTCGAAGAGGAAATGATAA
tgcttac putative branch site (score: 2)
cttacct CT-rich tract
tttcattgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttcattgtttttttggacgttctactgagatctaactgcttacctgtagGCTGGTTTGCCTTTGGTGCAACAGTATCTGTTTCAATTGGAACGGCTTGTCCGAGAGTATATCCCGAAACTTGGTGCTCATTTCGAAGAGGAAATGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA