1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtctcaacccaagctctttttatcaagatcatgttcttactagagttctttcatttttctcaactttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTCTCCGGCAAAGCGATTGTTGAGAAGCTACAAAGCGATGATTCCCGTCTT
species | Selaginella moellendorffii |
transcript | EFJ35213 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAG AGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTEST: gi|169080468|gb|FE488445.1|FE488445
genomic: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAGgttggtctca ... tttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTT
EST: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAG AGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTEST: gi|169047168|gb|FE457249.1|FE457249
genomic: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAGgttggtctca ... tttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTT
EST: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAG AGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTEST: gi|169045182|gb|FE451415.1|FE451415
genomic: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAGgttggtctca ... tttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTT
EST: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAG AGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTEST: gi|169047167|gb|FE457248.1|FE457248
genomic: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAGgttggtctca ... tttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTT
EST: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAG AGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTEST: gi|169080469|gb|FE488446.1|FE488446
genomic: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAGgttggtctca ... tttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTT
EST: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAG AGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTT
genomic: TGGTCACTTTGGACCCGTGATGCGGAGGCAGAGATTATTCCTACGTGCAGgttggtctca ... tttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTT
ttatcaagatcatgttcttactagagttctttcatttttctcaactttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTCTCCGGCAAAGCGATTGTTGAGAAGCTACAAAGCGATGATTCCCGTCTT
ttcttac putative branch site (score: 22)
ttctttcatttttctc putative PPT
tttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtctcaacccaagctctttttatcaagatcatgttcttactagagttctttcatttttctcaactttctcacagAGAGCTTGGCATCGGAATAGTTCCATACAGCCCTCTCGGACGAGGCTTCTTCTCCGGCAAAGCGATTGTTGAGAAGCTACAAAGCGATGATTCCCGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC