1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagagcaaagcttctcacagtaaaaacaaccacattttctttctctcgcagCCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAACGACTCTACCGCTGGAAGAGGTGGAGCATCTCTTGATCAAGAGCCTATCG
species | Selaginella moellendorffii |
transcript | EFJ34882 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGTGGGAGAAGATCAACATACTGTGCCTGATGGAAATCATCTTCAG CCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAACEST: gi|169054786|gb|FE460582.1|FE460582
genomic: AAGCTGTGGGAGAAGATCAACATACTGTGCCTGATGGAAATCATCTTCAGgtaagagcaa ... tctctcgcagCCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAAC
EST: AAGCTGTGGGAGAAGATCAACATACTGTGCTTGATGGAAATCATCTTCAG CCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAACEST: gi|169100885|gb|FE501708.1|FE501708
genomic: AAGCTGTGGGAGAAGATCAACATACTGTGCCTGATGGAAATCATCTTCAGgtaagagcaa ... tctctcgcagCCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAAC
EST: AAGCTGTGGGAGAAGATCAACATACTGTGCCTGATGGAAATCATCTTCAG CCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAAC
genomic: AAGCTGTGGGAGAAGATCAACATACTGTGCCTGATGGAAATCATCTTCAGgtaagagcaa ... tctctcgcagCCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAAC
gtaagagcaaagcttctcacagtaaaaacaaccacattttctttctctcgcagCCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAACGACTCTACCGCTGGAAGAGGTGGAGCATCTCTTGATCAAGAGCCTATCG
ttctcac putative branch site (score: 10)
ccacattttctttctc putative PPT
taaaaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagcaaagcttctcacagtaaaaacaaccacattttctttctctcgcagCCGCCCCTCCGACGAGAGGACCATCCCTCTGGCGCTCATCGCCGAGCGAACGACTCTACCGCTGGAAGAGGTGGAGCATCTCTTGATCAAGAGCCTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA