1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagctgttctcccttttattcctcttagttgtcgtctttatttctttctgtgtctgtgcagACAGCTAGCAAAAGCAACCTCGTGGCTTCACGGGATTTACCCGAGCCTGTTGTCGTAGAG
species | Selaginella moellendorffii |
transcript | EFJ34615 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGTGTTGGTCTTGCGGATAGATCTGCTTACGACTTGAAAGCGCACTCG ACAGCTAGCAAAAGCAAC-TCGTGGCTTEST: gi|169106169|gb|FE505686.1|FE505686
genomic: AATGTGTCGGTCTTGCGGATAGATCTGCTTACGACTTGAAAGCGCACTCGgtaagctgtt ... gtctgtgcagACAGCTAGCAAAAGCAACCTCGTGGCTT
EST: GGTCTTGCGGATAGATCTGCTTACGACTTGAAAGCGCACTCG ACAGCTAGCAAAAGCAACCTCGTGGCTTCACGGGATTTACCCGAGCCTGTTEST: gi|169080822|gb|FE486654.1|FE486654
genomic: GGTCTTGCGGATAGATCTGCTTACGACTTGAAAGCGCACTCGgtaagctgtt ... gtctgtgcagACAGCTAGCAAAAGCAACCTCGTGGCTTCACGGGATTTACCCGAGCCTGTT
EST: AATGTGTTGGTCTTGCGGATAGATCTGCTTACGACTTGAAAGCGCACTCG ACAGCTAGCAAAAGCAACCTCGTGGCTTCACGGGATTTACCCGAGCCTGTT
genomic: AATGTGTCGGTCTTGCGGATAGATCTGCTTACGACTTGAAAGCGCACTCGgtaagctgtt ... gtctgtgcagACAGCTAGCAAAAGCAACCTCGTGGCTTCACGGGATTTACCCGAGCCTGTT
ttctcccttttattcctcttagttgtcgtctttatttctttctgtgtctgtgcagACAGCTAGCAAAAGCAACCTCGTGGCTTCACGGGATTTACCCGAGCCTGTTGTCGTAGAG
tctttatttctttctg CT-rich tract
tttatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgttctcccttttattcctcttagttgtcgtctttatttctttctgtgtctgtgcagACAGCTAGCAAAAGCAACCTCGTGGCTTCACGGGATTTACCCGAGCCTGTTGTCGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA