1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggtggtggaatgttctccagttttttctttgtttgagctttttttaatgatttgtactcgttctgtctttttgatttttctaaccactcgtcgtgaactgtcaaacacagGTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTCCCGATTCCCTCACGTCCTGTGAGTGGCCGCCGAGAAAAG
species | Selaginella moellendorffii |
transcript | EFJ33688 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAG GTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTCEST: gi|169054072|gb|FE462307.1|FE462307
genomic: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAGgtatggtggt ... tcaaacacagGTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTC
EST: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAG GTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTCEST: gi|169109506|gb|FE510291.1|FE510291
genomic: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAGgtatggtggt ... tcaaacacagGTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTC
EST: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAG GTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTCEST: gi|169054073|gb|FE462308.1|FE462308
genomic: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAGgtatggtggt ... tcaaacacagGTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTC
EST: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAG GTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTC
genomic: ACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAGgtatggtggt ... tcaaacacagGTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTC
actcgttctgtctttttgatttttctaaccactcgtcgtgaactgtcaaacacagGTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTCCCGATTCCCTCACGTCCTGTGAGTGGCCGCCGAGAAAAG
ttctaac putative branch site (score: 4)
tttttgatttttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtggtggaatgttctccagttttttctttgtttgagctttttttaatgatttgtactcgttctgtctttttgatttttctaaccactcgtcgtgaactgtcaaacacagGTGAACTATTTTCCATCACGATTCGACGCAGTTCGCCACGCCGAGCAAGTCCCGATTCCCTCACGTCCTGTGAGTGGCCGCCGAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG