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gtactcttgagacttggaataaacttacgagatttgttcttcacttgttcatagGTAGTCATTGGGCCTGCTACTGTAGGTGGTATGCAGGCTGGTGCCTTCAAGATTGGAGATACTGCTGGTACTCTCGATAACATCGTGAGTTGTAAGCTTT
species | Selaginella moellendorffii |
transcript | EFJ33298 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGGCGATGCCAAAAAGCTGATAGCGTATGCCAGAGCAAATAACAAG GTAGTCATTGGGCCTGCTACTGTAGGTGGTATGCAGGCTGGTGCCTTCAAGEST: gi|169096413|gb|FE498142.1|FE498142
genomic: CGGAAGGCGATGCCAAAAAGCTGATAGCGTATGCCAGAGCAAATAACAAGgtactcttga ... ttgttcatagGTAGTCATTGGGCCTGCTACTGTAGGTGGTATGCAGGCTGGTGCCTTCAAG
EST: GCCAGAGCAAATAACAAG GTAGTCATTGGGCCTGCTACTGTAGGTGGTATGCAGGCTGGTGCCTTCAAG
genomic: GCCAGAGCAAATAACAAGgtactcttga ... ttgttcatagGTAGTCATTGGGCCTGCTACTGTAGGTGGTATGCAGGCTGGTGCCTTCAAG
gtactcttgagacttggaataaacttacgagatttgttcttcacttgttcatagGTAGTCATTGGGCCTGCTACTGTAGGTGGTATGCAGGCTGGTGCCTTCAAGATTGGAGATACTGCTGGTACTCTCGATAACATCGTGAGTTGTAAGCTTT
aacttac putative branch site (score: 7)
tttgttcttcactt putative PPT
aataaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcttgagacttggaataaacttacgagatttgttcttcacttgttcatagGTAGTCATTGGGCCTGCTACTGTAGGTGGTATGCAGGCTGGTGCCTTCAAGATTGGAGATACTGCTGGTACTCTCGATAACATCGTGAGTTGTAAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT