1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgagcttccttagattccttctttgctaccaagaatctctctctctctctctctctctctctccgctaacaagaaaccatttctttcagAGACTGGTAGCGAGGAGGAGAATGACTCCGCGGTGGACATGAGCGAGGATGACTTCTTTGCGAAAGAAAACAGCGACGATGGCAATGACGAGGAGCAAGA
species | Selaginella moellendorffii |
transcript | EFJ32422 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTAATATTGCGGCAGCCGCCGCCGCTGGTGTGGAGCTCGAGGAAGAAG AGACTGGTAGCGAGGAGGAGAATGACTCCGCGGTGGACATGAGCGAGGATGEST: gi|169065433|gb|FE473542.1|FE473542
genomic: TGCTAATATTGCGGCAGCCGCCGCCGCTGGTGTGGAGCTCGAGGAAGAAGgtatgagctt ... tttctttcagAGACTGGTAGCGAGGAGGAGAATGACTCCGCGGTGGACATGAGCGAGGATG
EST: TGCTAATATTGCGGCAGCCGCCGCCGCTGGTGTGGAGCTCGAGGAAGAAG AGACTGGTAGCGAGGAAGAGAATGACTCCGCGGTGGACATGAGCGAGGATGEST: gi|169105085|gb|FE505927.1|FE505927
genomic: TGCTAATATTGCGGCAGCCGCCGCCGCTGGTGTGGAGCTCGAGGAAGAAGgtatgagctt ... tttctttcagAGACTGGTAGCGAGGAGGAGAATGACTCCGCGGTGGACATGAGCGAGGATG
EST: TGCTAATATTGCGGCAGCCGCCGCCGCTGGTGTGGAGCTCGAGGAAGAAG AGACTGGTAGCGAGGAAGAGAATGACTCCGCGGTGGACATGAGCGAGGATG
genomic: TGCTAATATTGCGGCAGCCGCCGCCGCTGGTGTGGAGCTCGAGGAAGAAGgtatgagctt ... tttctttcagAGACTGGTAGCGAGGAGGAGAATGACTCCGCGGTGGACATGAGCGAGGATG
atctctctctctctctctctctctctctccgctaacaagaaaccatttctttcagAGACTGGTAGCGAGGAGGAGAATGACTCCGCGGTGGACATGAGCGAGGATGACTTCTTTGCGAAAGAAAACAGCGACGATGGCAATGACGAGGAGCAAGA
cgctaac putative branch site (score: 14)
ccatttctttc putative PPT
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagcttccttagattccttctttgctaccaagaatctctctctctctctctctctctctctccgctaacaagaaaccatttctttcagAGACTGGTAGCGAGGAGGAGAATGACTCCGCGGTGGACATGAGCGAGGATGACTTCTTTGCGAAAGAAAACAGCGACGATGGCAATGACGAGGAGCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA