1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaggctgtgcaaagtatgtgaattgcgaagtctctctctcggttttcttttttttttttgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGTGCTGGTCCTTTTGATGAAAACCAGCTCTTTGATTTTGCTGATTACAG
species | Selaginella moellendorffii |
transcript | EFJ32235 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCG GTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGEST: gi|169078028|gb|FE489879.1|FE489879
genomic: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCGgtaggctgtg ... tgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
EST: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCG GTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGEST: gi|169111898|gb|FE512188.1|FE512188
genomic: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCGgtaggctgtg ... tgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
EST: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCG GTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGEST: gi|169093647|gb|FE495798.1|FE495798
genomic: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCGgtaggctgtg ... tgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
EST: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCG GTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGEST: gi|169056587|gb|FE463838.1|FE463838
genomic: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCGgtaggctgtg ... tgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
EST: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCG GTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGEST: gi|169018913|gb|FE427306.1|FE427306
genomic: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCGgtaggctgtg ... tgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
EST: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCG GTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGEST: gi|169042341|gb|FE452876.1|FE452876
genomic: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCGgtaggctgtg ... tgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
EST: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCG GTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
genomic: TACCTTACTACGAACGAAATAAAAGCCGCGTTGGTGAAATACAAGTTCCGgtaggctgtg ... tgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGG
gtatgtgaattgcgaagtctctctctcggttttcttttttttttttgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGTGCTGGTCCTTTTGATGAAAACCAGCTCTTTGATTTTGCTGATTACAG
tctctctctcggtttt CT-rich tract
ttttcttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctgtgcaaagtatgtgaattgcgaagtctctctctcggttttcttttttttttttgcgtttcagGTTTTCGGACAGTGATCTGCAAGCACTTGCTCGGACCTACAGCAAAGTTGGTGCTGGTCCTTTTGATGAAAACCAGCTCTTTGATTTTGCTGATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT