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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttctgttcgtgtgtattgattttgtttaccttcttcttgcagACCGAGAATGCGTCGTATTTTGTTCAATCAAAGCACAAACTCAGCGCCTTTTTTGCTCTAGTATTTCGGTTCTCGTCCTGTCAACATCCTCTTTTGGCAT

Basic information

species Selaginella moellendorffii
transcript EFJ31555
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169054495|gb|FE462163.1|FE462163
EST:     TTCACATAAAAGCAGACGAAGATCTATCCAACATAGCCATAGACATTGAG                         ACCGAGAATGCGTCGTATTTTGTTCAATCAAAGCACAAACTCAGCGCCTTT
genomic: TTCACATAAAAGCAGACGAAGATCTATCCAACATAGCCATAGACATTGAGgtatgcttct ... cttcttgcagACCGAGAATGCGTCGTATTTTGTTCAATCAAAGCACAAACTCAGCGCCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgcttctgttcgtgtgtattgattttgtttaccttcttcttgcagACCGAGAATGCGTCGTATTTTGTTCAATCAAAGCACAAACTCAGCGCCTTTTTTGCTCTAGTATTTCGGTTCTCGTCCTGTCAACATCCTCTTTTGGCAT
                          tattgat  putative branch site (score: 3)
                                ttttgtttaccttctt  CT-rich tract
                          tattgattttgttta  TA-rich tract