1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatcacggctatgcatgaaaactttggttttgaggtctattttgtttgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGAGGAGTTGCTGTGCCAGCACTTGACAAGGATAAGCTGTGGGAATTCTCTC
species | Selaginella moellendorffii |
transcript | EFJ30330 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTACGTCGGGCGATGTCTACATCCCGCGAEST: gi|169096021|gb|FE500012.1|FE500012
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTACGTCGGGCGATGTCTACATCCCGCGAEST: gi|169067638|gb|FE475315.1|FE475315
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGAEST: gi|169047687|gb|FE454855.1|FE454855
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTACGTCGGGCGATGTCTACATCCCGCGAEST: gi|169058961|gb|FE467729.1|FE467729
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTACGTCGGGCGATGTCTACATCCCGCGAEST: gi|169045569|gb|FE452530.1|FE452530
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGAEST: gi|169080609|gb|FE490952.1|FE490952
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTACGTCGGGCGATGTCTACATCCCGCGAEST: gi|169038846|gb|FE446989.1|FE446989
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGAEST: gi|169094897|gb|FE491631.1|FE491631
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTACGTCGGGCGATGTCTACATCCCGCGAEST: gi|169083648|gb|FE495381.1|FE495381
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
EST: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAG CGTCCTCTTAAATCCATTGCCATTACGTCGGGCGATGTCTACATCCCGCGA
genomic: CAGTAGAGCTTGGACCTGGAATTTTGAGCAACATCTTCGATGGTATTCAGgtatcacggc ... tgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGA
atcacggctatgcatgaaaactttggttttgaggtctattttgtttgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGAGGAGTTGCTGTGCCAGCACTTGACAAGGATAAGCTGTGGGAATTCTCTC
gtttgat putative branch site (score: 40)
ttttgttt CT-rich tract
tattttgtttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcacggctatgcatgaaaactttggttttgaggtctattttgtttgatttgcagCGTCCTCTTAAATCCATTGCCATTAAGTCGGGCGATGTCTACATCCCGCGAGGAGTTGCTGTGCCAGCACTTGACAAGGATAAGCTGTGGGAATTCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG