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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggccctggactcgctctctcctttcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG

Basic information

species Selaginella moellendorffii
transcript EFJ29839
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29839 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G372477_T01 (Zea mays), 3'ss of exon 6
-------------------------------------------gtaagt---ggccctggactcgctctct--cctttcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG
                                           | ||||     ||    || |  | |||  | |||    |||| ||  |     ||||||||||||| |||||||| ||||||||||| || || || |||||||| ||||| |  || ||         |||
tcttcgattggacaatgtattgccaacttttgttctataatcagcaagtcatatcctgaaacccattgtctaacgttttggcatttatcactttgatcagATGGAAATGGTTTTAAGACTAGCACAATGCGGCTTGGGGCAGATGTTATTGTTTTCAGTCGCTGCACTAAGAGCAG

upper sequence: EFJ29839 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G021864_T01 (Zea mays), 3'ss of exon 5
------------------------------------------------gtaagtggccctggactcgctctctcctttcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG
                                                     |||   ||   || ||   | ||||| |   || | ||     |||||||||||||| |||||||| ||||||||| | || ||||| ||||  || ||||| || |||  | |||| |   |
tataattttttatttagtatctagcttctttataatagcatgtataaaactcttggtattgctgtctcttgttactttcttaccttcttctactgcgcagATGGAAATGGCTTTAAGACAAGCACAATGAGACTTGGTGCAGATGCAATTGTTTTTACTCGTGCTATCCGAGGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtggccctggactcgctctctcctttcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG
                                tcctgat  putative branch site (score: 3)
                  ctcgctctctcctttc  CT-rich tract