1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtgagtgatgagtgagctagtactagtttacgcaagtttttggacagGAACACAAGTGGTTACTGCTCAAAGCCCGGTAGGCACACTCGGTCTGACGATATGCTACGACTTGAGATTCCCGGAGCTGTACCAGCGTCTCAGGTTTAC
species | Selaginella moellendorffii |
transcript | EFJ29757 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATGTTCCCGGAGGCCCAGTTCTAAAGGAGAGCAATCGCACTGCTCCTG GAACACAAGTGGTTACTGCTCAAAGCCCGGTAGGCACACTCGGTCTGACGAEST: gi|169116453|gb|FE517478.1|FE517478
genomic: GGATGTTCCCGGAGGCCCAGTTCTAAAGGAGAGCAATCGCACTGCTCCTGgtgagtgagt ... ttttggacagGAACACAAGTGGTTACTGCTCAAAGCCCGGTAGGCACACTCGGTCTGACGA
EST: GGATGTTCCCGGAGGCCCAGTTCTAAAGGAGAGCAATCGCACTGCTCCTG GAACACAAGTGGTTACTGCTCAAAGCCCGGTAGGCACACTCGGTCTGACGA
genomic: GGATGTTCCCGGAGGCCCAGTTCTAAAGGAGAGCAATCGCACTGCTCCTGgtgagtgagt ... ttttggacagGAACACAAGTGGTTACTGCTCAAAGCCCGGTAGGCACACTCGGTCTGACGA
gtgagtgagtgatgagtgagctagtactagtttacgcaagtttttggacagGAACACAAGTGGTTACTGCTCAAAGCCCGGTAGGCACACTCGGTCTGACGATATGCTACGACTTGAGATTCCCGGAGCTGTACCAGCGTCTCAGGTTTAC
ttttt CT-rich tract
aagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagtgatgagtgagctagtactagtttacgcaagtttttggacagGAACACAAGTGGTTACTGCTCAAAGCCCGGTAGGCACACTCGGTCTGACGATATGCTACGACTTGAGATTCCCGGAGCTGTACCAGCGTCTCAGGTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT