1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttcgcatttggtctttgttgcttcgtttctagattgttggatttggtaatgcagTGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAA
species | Selaginella moellendorffii |
transcript | EFJ29221 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCATTGCCTGCTCTAGACGCTGTCTACTTCATTCAGCCTTCGAGGGAAAG TGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAAEST: gi|169048406|gb|FE457355.1|FE457355
genomic: CCATTGCCTGCTCTAGACGCTGTCTACTTCATTCAGCCTTCGAGGGAAAGgttcgcattt ... ggtaatgcagTGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAA
EST: CCATTGCCTGCTCTAGACGCTGTCTACTTCATCCAGCCTTCGAGGGAAAG TGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAAEST: gi|169116012|gb|FE517375.1|FE517375
genomic: CCATTGCCTGCTCTAGACGCTGTCTACTTCATTCAGCCTTCGAGGGAAAGgttcgcattt ... ggtaatgcagTGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAA
EST: CCATTGCCTGCTCTAGACGCTGTCTACTTCATTCAGCCTTCGAGGGAAAG TGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAA
genomic: CCATTGCCTGCTCTAGACGCTGTCTACTTCATTCAGCCTTCGAGGGAAAGgttcgcattt ... ggtaatgcagTGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcatttggtctttgttgcttcgtttctagattgttggatttggtaatgcagTGTGAAGAAATTTGTCTCGGATATGTCAGGAAAGTCTCCTCTCTACAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC