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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgtccagatttattatgtcttcgatgataaacaagtttatgcagCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACGCCTACAGTA

Basic information

species Selaginella moellendorffii
transcript EFJ28229
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ28229 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G100809_T01 (Zea mays), 3'ss of exon 4
-------------------------------------------------gtaagctgtccagatttattatgtcttcgatgataaacaagt-ttatgcagCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACGCCTACAGTA
                                                 |  |  | |   ||  |  |       |  | || | |   | |  | ||||||| ||  |  |||| ||||| || |||||||||||||||||  |||||| ||||||||||  |   || || ||  | ||||| ||| |  | || ||
agaatcagttggattggtggtggtaaaacaccctgaagaaatctcggttgctatatatttcgagcttgtgcactaacctttattatcttctatctttcagCTGGCATTGTGATAGAAGAGAAAAATTGGCCTCCCTTTTTCCCCCTCATCCACCATGACATTTCTAATGAGATACCTATCCATCTACAAAGGATGCAATA

upper sequence: EFJ28229 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G174730_T01 (Zea mays), 3'ss of exon 4
-------------------------------------------gtaagctgtc-cagatttattatgtcttcgatga------taaacaagtttatgcagCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACGCCTACAGTA
                                            |  | |||   | |||| |  | | | |  | |      | | |   | | | |||||||  |  |  |||| ||||| ||||||||||||||||||||  |||||| ||| ||||||      || || ||  | ||||| ||| |  | |||||
catagagggttggataccctaaccctaaacaccctgaagaaatatgggttgttatatatttttagtttttccactaacctttgtcatcttttattttcagCTGGCGTTGTGATAGAAGAGAAAAACTGGCCTCCCTTTTTCCCCCTCATCCACCACGACATTTCCAATGAAATACCTATCCATCTACAAAGGATGCAGTA

upper sequence: EFJ28229 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 5
---------------------------------------------gtaagct--gtccagatttattatgtcttcgatg-ataaacaagtt--tatgcagCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACGCCTACAGTA
                                              |||  |  || | | |||  ||  |||   | | ||  |||  ||  | ||||||||||||  |||| ||||||||||| ||||| || |||||||| || ||||  |||||||||  |   || |||||| | |||||||||    | || ||
atgatagtactgccgaaatctatagatgtcttggaattatatgcactaattttagttctgctttggtacttctagtaggtatttacattttgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCATCATGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagctgtccagatttattatgtcttcgatgataaacaagtttatgcagCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACGCCTACAGTA
                           atttattatgtctt  TA-rich tract