1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcaaagtttccaagtttaaagtcttgcaattatatttctgaggaaacaggtgcttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAAG
species | Selaginella moellendorffii |
transcript | EFJ27687 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAAEST: gi|169067518|gb|FE475260.1|FE475260
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
EST: CTTTGACTGCGGAAACTTGTGCACCGCTTATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGAGGAGTTTTTAGCGTCTTTCAAEST: gi|169071278|gb|FE478410.1|FE478410
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
EST: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAAEST: gi|169044047|gb|FE451633.1|FE451633
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
EST: CTTTGACTGCGGAAACTTGTGCACCGCTTATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGAGGAGTTTTTAGCGTCTTTNCAEST: gi|169112908|gb|FE514660.1|FE514660
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
EST: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAAEST: gi|169039922|gb|FE447608.1|FE447608
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
EST: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAAEST: gi|169102324|gb|FE506548.1|FE506548
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
EST: CTTTGACTGCGGAAACTTGTGCACCGCTTATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGAGGAGTTTTTAGCGTCTTTCAAEST: gi|169112110|gb|FE513453.1|FE513453
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
EST: CTTTGACTGCGGAAACTTGTGCACCGCTTATTGCCACGCTTCCATTAGAG ATTCGTGGCAAGATTGAGACGTTCATAAGAGGAGTTTTTAGCGTCTTTCAA
genomic: CTTTGACTGCGGAAACTTGTGCACCGCTCATTGCCACGCTTCCATTAGAGgtcaaagttt ... cttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAA
ttccaagtttaaagtcttgcaattatatttctgaggaaacaggtgcttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAAG
gcttgat putative branch site (score: 17)
ttgcaattatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaagtttccaagtttaaagtcttgcaattatatttctgaggaaacaggtgcttgatgcagATTCGTGGCAAGATTGAGACGTTCATAAGGGGAGTTTTTAGCGTCTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG