1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaaatctaccgtttctaactggaagtgttactgaagttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACGTTAACCGATATATCTAACAAGATAAAGAAGGGAACAAAGGGTGATGTAA
species | Selaginella moellendorffii |
transcript | EFJ27012 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAA GTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCTCTGACGEST: gi|169053815|gb|FE462895.1|FE462895
genomic: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAAgtaaaatcta ... ttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACG
EST: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAA GTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCTCTGACGEST: gi|169068348|gb|FE479172.1|FE479172
genomic: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAAgtaaaatcta ... ttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACG
EST: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAA GTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCTCTGACGEST: gi|169025464|gb|FE436078.1|FE436078
genomic: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAAgtaaaatcta ... ttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACG
EST: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAA GTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCTCTGACGEST: gi|169020907|gb|FE431985.1|FE431985
genomic: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAAgtaaaatcta ... ttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACG
EST: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAA GTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCTCTGACGEST: gi|169087630|gb|FE494669.1|FE494669
genomic: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAAgtaaaatcta ... ttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACG
EST: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAA GTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCTCTGACG
genomic: TCTACATTGCTTATCTCCCACTTGCCCACATTTTGGAACTCGCTGCGGAAgtaaaatcta ... ttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACG
gtaaaatctaccgtttctaactggaagtgttactgaagttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACGTTAACCGATATATCTAACAAGATAAAGAAGGGAACAAAGGGTGATGTAA
ttctaac putative branch site (score: 24)
taaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatctaccgtttctaactggaagtgttactgaagttcgctacagGTGACCATGCTGGCGGTTGGAGCTTCCATTGGTTATGGCTCACCGCTGACGTTAACCGATATATCTAACAAGATAAAGAAGGGAACAAAGGGTGATGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG