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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgggagatattttgcacgagaatatgctgacttttgaaaatggcgatggcagGGGGCGGGAGGAAGGTGATCAGGGTTGAGGTGACGCTCGACGGCGGCGAGACGTGGGCGCTGGCGGATCTGACGCACCCGGAGCGGCCCACCAAGTATGG

Basic information

species Selaginella moellendorffii
transcript EFJ26567
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26567 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM5G878558_T01 (Zea mays), 3'ss of exon 2
---------------------------------------gtacgggagatattttgcacgagaatatgctgacttttgaaaatggcg------atggcagGGGGCGGGAGGAAGGTGATCAGGGTTGAGGTGACGCTCGACGGCGGCGAGACGTGG-GCGCTGGCGGATCTGACGCACCCGGAGCGGCCCACCAAGTATGG
                                        |     || |   |||   |  || |     |||   |    ||| |       || |||| |||||  |||| || | | |||| ||||||||||| ||||||||||||||||||   |   ||      ||| ||||||||||| || |||||||| ||
aaacaacgtttgaggcttctattgggctttccaagcctattttcctagtttccttgtgggctaaaaccgaaactcacggtggtggtgcctctgttgccagGTGGCGGCCGGAAAGTAACCCGGGTGGAGGTGACGCTGGACGGCGGCGAGACGTGGCATGTGTGCTCGCTCGAC-CACCCGGAGCGTCCAACCAAGTACGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgggagatattttgcacgagaatatgctgacttttgaaaatggcgatggcagGGGGCGGGAGGAAGGTGATCAGGGTTGAGGTGACGCTCGACGGCGGCGAGACGTGGGCGCTGGCGGATCTGACGCACCCGGAGCGGCCCACCAAGTATGG
                           tgctgac  putative branch site (score: 2)
                                  ttttgaaaat  TA-rich tract