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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttttaacgttaatttttctgtgcgtcctatccgtgctactaaggtacagTTGTGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGA

Basic information

species Selaginella moellendorffii
transcript EFJ26184
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26184 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: PP1S101_210V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------gtaatgttttaacgttaatttttctgtgcgtc--ctatccgtgctac-taaggtacagTTGTGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGA
                                            |       |    |     |  |||| |||   ||   || ||   || |  |||| | ||||| ||||||||||| |||||||| || |||||||| |||||||| |  ||  |||   |||||||||| ||||| ||||| |||||||| || |
catgaattcttacttacaaatactcaaattcctcttaactacacagctgcacagatctgtagatattgtgagtcgattaatggttctgtgtatgtgacagCTTTGGGATTTGACTGCTGGCAAGCTCATGCACGATTTTAAATACCATGAAGGCCAAGTTCAATGTCTAGACTTTCATCCACATGAGTTCCTTCTCGCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgttttaacgttaatttttctgtgcgtcctatccgtgctactaaggtacagTTGTGGGACTTGACTGCTGGGAAGCTCATCCATGATTTTAAGTACCATGACGATCAGATTCTCAGTCTAGACTTCCATCCTCATGAATTCCTTCTTGCGA
      ttttaacgttaatttt  TA-rich tract