1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaactctactgaagaattcttcttttggtgtgcttacgaaacttgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTACCTCGCTTCAAAAGCCGAAGAGAGTACCGTTCAAGCCAAGCTTCTCATA
species | Selaginella moellendorffii |
transcript | EFJ25939 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAG GAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTAEST: gi|169039534|gb|FE449924.1|FE449924
genomic: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAGgtaactctac ... tgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTA
EST: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAG GAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTAEST: gi|169075643|gb|FE482029.1|FE482029
genomic: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAGgtaactctac ... tgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTA
EST: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAG GAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTAEST: gi|169075642|gb|FE482028.1|FE482028
genomic: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAGgtaactctac ... tgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTA
EST: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAG GAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTAEST: gi|169048646|gb|FE454476.1|FE454476
genomic: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAGgtaactctac ... tgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTA
EST: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAG GAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTAEST: gi|169039535|gb|FE449925.1|FE449925
genomic: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAGgtaactctac ... tgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTA
EST: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAG GAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTA
genomic: TGTTGTGGCGACAGCGATCGCATATTTCCGACGGGTTTACACCAGgtaactctac ... tgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTA
gtaactctactgaagaattcttcttttggtgtgcttacgaaacttgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTACCTCGCTTCAAAAGCCGAAGAGAGTACCGTTCAAGCCAAGCTTCTCATA
tgcttac putative branch site (score: 6)
cttgtttt putative PPT
ttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctactgaagaattcttcttttggtgtgcttacgaaacttgttttacagGAAAAGCTTTTCAGAGTATGATCCTCGGCTTGTGGCACCGACATGCCTGTACCTCGCTTCAAAAGCCGAAGAGAGTACCGTTCAAGCCAAGCTTCTCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT