1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtgtagcaaaggaaaagttcctggaaaagttttttcatcttgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGCTACAACCCCGATCGACTCGCGCAAAACCTCCAGAGCTTCGACTTCTCTC
species | Selaginella moellendorffii |
transcript | EFJ25928 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCGCGGACTCGGTGCCATCGTCAAGAGCEST: gi|169095805|gb|FE498379.1|FE498379
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
EST: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCGCGGACTCGGTGCCATCGTCAAGAGCEST: gi|169082071|gb|FE486462.1|FE486462
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
EST: ATCCAGTCGTTCAAGAGCTCGCATCCNAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTNCA-GAGEST: gi|169037551|gb|FE446292.1|FE446292
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGT-CAAGAG
EST: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGCEST: gi|169082070|gb|FE486461.1|FE486461
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
EST: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGCEST: gi|70669580|gb|DN838157.1|DN838157
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
EST: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGCEST: gi|169100748|gb|FE502182.1|FE502182
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
EST: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGCEST: gi|169037552|gb|FE446293.1|FE446293
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
EST: ATCCAGTCGTTCAAGAGCTCGCATCCNAGTACCAGAAAACTCCAGCTCAG ATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
genomic: ATCCAGTCGTTCAAGAGCTCGCATCCAAGTACCAGAAAACTCCAGCTCAGgtgtgtagca ... tgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGC
gtgtgtagcaaaggaaaagttcctggaaaagttttttcatcttgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGCTACAACCCCGATCGACTCGCGCAAAACCTCCAGAGCTTCGACTTCTCTC
ttttttcatcttgttt CT-rich tract
aaaagttttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtagcaaaggaaaagttcctggaaaagttttttcatcttgttttccagATAATTCTTCGCTGGATCACCACGCTCGGACTCGGTGCCATCGTCAAGAGCTACAACCCCGATCGACTCGCGCAAAACCTCCAGAGCTTCGACTTCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT