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gtagcgatgtgttgcattgcctggctggttaacagaatttatctttttccagCCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCAGTGGGATGGAGAAGAGAGGGTCTTGTTTACAAGAAAAACGAG
species | Selaginella moellendorffii |
transcript | EFJ25669 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAG CCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCAEST: gi|169073216|gb|FE481045.1|FE481045
genomic: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAGgtagcgatgt ... ctttttccagCCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCA
EST: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAG CCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCAEST: gi|169050965|gb|FE458135.1|FE458135
genomic: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAGgtagcgatgt ... ctttttccagCCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCA
EST: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAG CCCATAGATACAAGACCCCCAGCAAATGCTACTCTCCAAGTCACCGGTGCAEST: gi|169066974|gb|FE475964.1|FE475964
genomic: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAGgtagcgatgt ... ctttttccagCCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCA
EST: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAG CCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCA
genomic: TTTTGAAGCTCTATATAACTCAGGAGGGTGTTCGTTCGCCATTCTCGAAGgtagcgatgt ... ctttttccagCCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCA
gtagcgatgtgttgcattgcctggctggttaacagaatttatctttttccagCCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCAGTGGGATGGAGAAGAGAGGGTCTTGTTTACAAGAAAAACGAG
ggttaac putative branch site (score: 12)
tttatctttttcc putative PPT
agaatttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcgatgtgttgcattgcctggctggttaacagaatttatctttttccagCCCATAGATACAAGACCCCCAGCAAATGCTACTCTTCAAGTCACCGGTGCAGTGGGATGGAGAAGAGAGGGTCTTGTTTACAAGAAAAACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA