1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttgatctttcatttgatttttttattttttattttttttccgtcttgatggttcttcgttgtagATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTGACTGGAAAGATAACTGTCTAAG
species | Selaginella moellendorffii |
transcript | EFJ24576 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTTGCAGCTCAAACAACAGCTCATAGACTTGGAAGCATCCACTTCAG ATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTGEST: gi|169101120|gb|FE500981.1|FE500981
genomic: GATCTTGCAGCTCAAACAACAGCTCATAGACTTGGAAGCATCCACTTCAGgttgatcttt ... ttcgttgtagATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTG
EST: GATCTTGCAGCTCAAACAACAGCTCATAGACTTGGAAGCATCCACTTCAG ATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTGEST: gi|169028207|gb|FE434032.1|FE434032
genomic: GATCTTGCAGCTCAAACAACAGCTCATAGACTTGGAAGCATCCACTTCAGgttgatcttt ... ttcgttgtagATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTG
EST: GATCTTGCAGCTCAAACAACAGCTCATAGACTTGGAAGCATCCACTTCAG ATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTG
genomic: GATCTTGCAGCTCAAACAACAGCTCATAGACTTGGAAGCATCCACTTCAGgttgatcttt ... ttcgttgtagATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTG
catttgatttttttattttttattttttttccgtcttgatggttcttcgttgtagATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTGACTGGAAAGATAACTGTCTAAG
tcttgat putative branch site (score: 2)
ttcttcgtt putative PPT
atttttttatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgatctttcatttgatttttttattttttattttttttccgtcttgatggttcttcgttgtagATACAAAGACAGTGCTTGCACAATTAGAGCAAATCTACAGATCAGCTGGTGACTGGAAAGATAACTGTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG