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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG

Basic information

species Selaginella moellendorffii
transcript EFJ23803
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g47016.1 (Oryza sativa), 3'ss of exon 1
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttga-catttgct-tcgttgtgctgg-acagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                                                || | | |   ||| |   | ||  | |   |   |         |   ||| |  ||||  | | ||||  ||  ||||||    | ||| ||   || ||| | || || ||||||||| | |||||||||||||||||||| || |||||||| ||||| |||||||| |||  | 
----------------------------------------------------------------gtacgacgatcttgcttaattttgatctgtgtaagaagaagaagatggctgatcgattgcagttgctgtggcggtgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTGGACGCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCGACGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g51690.3 (Oryza sativa), 3'ss of exon 3
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgg-gcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                         | |  ||    |  |  ||    | |||      |   ||  || || ||  ||    ||       ||||  |||| | | | |        || |  ||     ||  |  |||||||  || |||  |   || ||| | || || ||||||||||  |||||||||||||||||||| || |||||| | |||||||||||||| ||    |
-------------------------tagttatctactaccatttctgtgctataaaatataatgcaagctatcgccatgcagatt-------tcctgatcatggttatgt--------atctattttac-atgtggagcagGAGAGTCAGAAGGTGGCACTGGCGGAGTCGACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCCTCCG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g56110.2 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgc-tggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                  |  |      || | |   |  |  |        |     ||| | |      |     | ||| |         |   ||| |||| |   ||||||  ||  |||||||   | |||  ||  || |||||  | || ||||||||||  |||||||||||||||||||| || |||||| | |||||||||||||| |||  | 
---------------------------------gtacgcacgcatcacatcccgtttgatcaattcaaccacattttctgcaccaaattaactcgtttgaaaa------tgcgtgaaatttacggggttgtgtatgagcagGAGATGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os03g56140.2 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattc-tgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||  |||  | | | | |  ||| | || ||   | |       | ||   | ||  ||    | |      |   |  || |     | |    | | | |   |||  ||  ||||||    | |||  ||  || |||||  | || ||||||||||  |||||||||| ||||||||| || |||||| | |||||||||||||| |||  | 
------------------------gtacgcacgcatatatatgcttcccatt-tgatcaattcaaccac-atttttctgcaccaaactcgatcttatgaaaatgcgtgaacttctcgggtgtacatgtgtgta-tgagcagGAGGTGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAGCAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os05g03884.1 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttc--gttg-tgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                                        || ||  || |  |  || || |     |       ||| |    | |  |   ||  |||  |  ||||   ||| |  |  ||||||  |  | |||  ||  || ||       || || || ||||| |||||||||||||||||||| || |||||| | ||| |||||||||| ||   ||
-------------------------------------------------------gtaatgt-cgcgaaaacgccttttcgacacacaaaagcctctaacccacactgacctgggactctgtcttccaattgatctttcacagGAAGAGGATAAGGTGAGGCTGGCCGCGATGACTGGCCTCGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGAGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os01g19694.1 (Oryza sativa), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                   |  | |||  | |  | ||  |        | |  |  ||    |  |    |   |  | ||  |   | | || | |||| ||    | ||  || | |||||||  |  | |||  ||  || ||       || || || |||||||||||||||||||| ||||| || |||||| | ||| |||||||||| ||   ||
----------------------------------cgcttgtctgccccact-tgcatcccttcttttctgtaactgaaattttgtggtacattatgttagta--tatattgtctgacgttg---tggtgctgattgacagGAAGAAGATAAGCTGAGGCTTGCAGCGAGGACAGGTCTTGACCCAAAGCAGATCAACAATTGGTTCATCAACCAGAGGAAGAGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os07g03770.1 (Oryza sativa), 3'ss of exon 4
--gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctt-tgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
    || |||   |      || | || |   ||   ||   |    |   |||      |    | |       |     || |  ||    ||   | ||||      || ||   |  |||||  |  || | ||   ||||||   | |||      || ||| |||| || || || || |  |||||||||||||||||||| || |||||| | || ||||||||||| ||   ||
gtaagattacacatacaaaattacctgataatatatagtaattgccaca-attacctaatgcatacatagttctacaaacatcttagttcagatcagatgcatcatcacattgttactaactttgcaccaatgggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G135447_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
|| ||  |||   | |  || |||     |  ||  ||  |   |      | ||| | |       |  || || ||||        |        | |    |||  |   ||||   || ||||  || ||   |||||||   | |||  |   |||||  |  | |||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||  | 
gtaagaccctacctatgtttcctt-----ccatccatgcattgctaatacaacggcaacta------ctgtgtctatgtttggaagaagaaaaaaaatgaagcttttgatgcatgactactgtttcga-gtactcaccagGAGACGGAGAAGATGGCGCTCGCAGAGACGACCGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCGGCGT

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G094241_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctt-tgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                                    |  | | ||   |   | ||||       |       |  ||  |  |     |      | ||  |   || |      || |  |||||| |  | |||  ||  || |||    | || ||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||   |
---------------------------------------------------gtaacca-tgcatgcatcctggcaaacacgcagcagcagcatcgctcgctggaatggcagatctgtgaccagcattagccggcggtgcagGAGGAGGACAAGGTGAGGCTGGCGGCGGCGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCGTCCG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM5G832409_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattct-gtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                          |  ||| ||     | |   |  ||  ||  |    |   |  | | ||||||  |   |  |     || |     || |||| ||  |||  |   |   |||| |  | |||||| |  | |||  ||  || |||      || ||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||||| |||  ||
-------------------------gtaacatgctcacagcacacacctgtgctg--tgactgatctttcctcgctttgaacgaacaatcgaatctgtgatcggcattttgctcagac--taagtatcttgttc--ggcagGAGGAGGATAAGGTGAGGCTGGCGGCCATGACTGGGCTGGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCATTGGAAGCCGTCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G017087_T03 (Zea mays), 3'ss of exon 3
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                  | | ||   |  || || ||     |||  ||    |      |    |    |||| | |    |  |  | |   ||   ||  | ||||     | ||  |||||||  || |||  |   || ||  | || |||||||| ||||  |||||||||||||||||||| || |||||||| |||||||||||||| ||    |
---------------------------------ttttatcatatcttcattttgt----tggatgttttgta-tacggcatatagcctgtg-cttccctactggatatgaattaaccaact-cttcccatcggtgagcagGAGACTCAGAAGGTGGCACTGGCTGAGTCTACCGGGCTTGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCATCCG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G452178_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgc-catg-gctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
|||||   ||      |||  | ||  | | | |  |  | |  |   |  | |     |   ||| | |||       |  | | | ||||| ||||  | ||||| |  |  |     ||||  |     |||     ||||||   | |||      || ||  |  | || || |||||||  |||||||||||||||||||| || |||||||| |||||||||||||| |||  ||
gtgagagact----aatctcccgtgcggccgtgccttaacacaatgctgaca-gatcgattaccgtactcatacagcacgcgcgtgccttgtgcccttggc-tcgctgtgcttgt----gtttgtctgaacatgc-----agGAGACGGAGAAGATCGCGCTGGCAGAGGCGACTGGCCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGGCACTGGAAGCCGTCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G061101_T02 (Zea mays), 3'ss of exon 3
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgc-catggctttgttccttctttgtgtc-cttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                   ||   |  | | | | |   |   ||    |||       |  | || | |  || | | |||  |  |||      |          ||   |   |||  | ||||||    | ||| ||   || ||| | || || ||||| ||| | |||||||||||||||||||| || |||||||| ||||| |||||||| |||  | 
-----------------------------------gtacgtagtac-catgacaacacatgcatatgcgtgcatgtaagatcatgcaatgcgacacttgacgacgcacgccgc----------gcgcggccatgcatg-cagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGACGCGAAGCAGATCAACAACTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCCGGCGC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G002225_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgc-catggctttgttccttctttgtgtccttttcatcgctt--ttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                |  | |    ||||     | | | |    || ||  | |    | |||   |       | |  | || | |||  |       |||    ||  | | | | |   ||||||    | ||| ||   || ||| | || || ||||| ||  | |||||||||||||| ||||| || |||||||| ||||| |||||||| | |    
-------------------------------gtacgcgagagtttccacgcacgtccatcatgcatgttcgtattgtagttttgtaagatcatgcaatgcaccacttggtgacgcacgacgccggccgcat-gcg-tatgcagGAGCTGGAGAAGGCGGCGCTGGCGGAGTCGACGGGGCTCGAAGCGAAGCAGATCAACAATTGGTTCATCAACCAGCGGAAGCGCCACTGGAAGCAGGCAC

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G028041_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                               ||| ||| |  || | || | |    | ||       ||   |  ||  |       |  |   ||  ||  | || ||  | ||  |    || |||     |  |||||||   | |||      |||||  |||| || || || ||||  |||||||||||||||||||| || |||||| | || ||||||||||| ||   ||
-------------------------------ttccgtgacctttacgcgatgttaacactg----cttcagaaccatgaactgaagcagaatgtattgtataacattgttact-gatttaatgtttgtt----cgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G087741_T01 (Zea mays), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||  | |  |  || |  ||| |  | |   | |     |      ||    ||    | |  |||| ||     |  |  |  |  | |||    ||||  | ||     |||||||| |  | |||  ||  |||||   |   ||||| || ||||| |||||||||||||||||||| || |||||| | ||| |||| ||||| ||    |
------------------------gtatgtaggcgctggccattttttttcac--caaacaatc------tgaacctgcaggtgcactgtgacc-----agtgactgataatctga----tgctgtgctgct---gacagGAGGAAGACAAGGTGAGGCTCGCAGCAATGACCGGTCTCGACCCGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGAGGCATTGGAAGCCATCTG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv17s0000g08710.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||    |    || ||  |||   |||  || |  |  || |   ||  ||  |  ||||| |  |||  ||   |||    || ||||||       |||   ||| | |||  |||  ||  ||  ||| | || ||  |||| || || |||||||  |||||||| ||||||||||| |||||||| || || ||||||||||| ||   ||
------------------------gtaaaaaagtagt-tcaatttaaagtttagggt--ttagcatatgata-ctccgacccttcataatgttattaatatcttacttctctttg-------cttaaatgtacagGA--GGAAGAC--AAGATCGCA-CTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv01s0127g00210.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctct-ttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                        ||  ||| | ||||| |   ||  | |||| |   |||||  ||| ||  || | |||    | | || || |   | ||||||||  | |   ||    | |     ||||             ||| | | | || ||  || | || || |||||||  ||||| || ||||| ||||||||||| || ||||||||||||||||| ||    |
--------------------gtaagtctgcactttgtgttttcatttcctttatag--ggtgggaatgc-ata-ctattttctgagtctttgaccat---accgctttttcttatataat--aatccagGAAGCTGAT-----------AAAATTGCA-CTTGCTGAAACAACGGGTCTGGACCAGAAGCAAATTAACAATTGGTTTATAAATCAACGAAAGCGGCACTGGAAACCATCAG

upper sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv14s0060g01180.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                                        |   | | |   | |    | |   ||| || |||  |   ||| |||   | | ||||    |   | |||   |     | ||  |  || |  ||||||  |  | || | ||| ||  |  |    || || || ||||  |||||||| ||||||||||| ||||||||| | |||||||| ||||| ||    |
-----------------------------------aaaagttcatattggagttgtatttagaactgctatcgctgggacacttgtttactttcatttctggacacgtatctgaaaag---gattgatgatgat--acagGAAGATGAGAAATTGAAGCTATCAGAGGTTACTGGACTAGACCAGAAGCAGATTAACAACTGGTTCATAAACCAGAGGAAGCGGCATTGGAAACCATCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 7

GGAATATCTCAAGAAGAAGAAAAAGGGGAAGCTCCCCAAGGAATCGAGGCAGCAGCTGCTGGACTGGTGGTCACAGCACCAGGATCATCCGTATCCCAATgtgagtacct ... tgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
                         ctttgac  putative branch site (score: 7)
                   ttttttcttt  TA-rich tract