1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaccacggtcacttactttcttgggctcttttttttaaaaacctgtccttttgtagCTTGCTGTAGCGGATTTGACCGAAGCTGCTGCTGTTGCGCCTGACGATGAGACTGTAGCAGACGTCTTGCGCGTGGCAAAGGAAGAGCTAGAAAGGGAGG
species | Selaginella moellendorffii |
transcript | EFJ23762 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTTGTACCGTCGTGGTCAAGCATACAAGGAACTGGGAAAGCTTAAG CTTGCTGTAGCGGATTTGACCGAAGCTGCTGCTGTCGCGCCTGACGATGAGEST: gi|169116298|gb|FE517245.1|FE517245
genomic: AAGCTTTGTACCGTCGTGGTCAAGCATACAAGGAACTGGGAAAGCTTAAGgtaaccacgg ... ccttttgtagCTTGCTGTAGCGGATTTGACCGAAGCTGCTGCTGTTGCGCCTGACGATGAG
EST: AAGCTTTGTACCGTCGTGGTCAAGCATACAAGGAACTGGGAAAGCTTAAG CTTGCTGTAGCGGATTTGACCGAAGCTGCTGCTGTCGCGCCTGACGATGAG
genomic: AAGCTTTGTACCGTCGTGGTCAAGCATACAAGGAACTGGGAAAGCTTAAGgtaaccacgg ... ccttttgtagCTTGCTGTAGCGGATTTGACCGAAGCTGCTGCTGTTGCGCCTGACGATGAG
accacggtcacttactttcttgggctcttttttttaaaaacctgtccttttgtagCTTGCTGTAGCGGATTTGACCGAAGCTGCTGCTGTTGCGCCTGACGATGAGACTGTAGCAGACGTCTTGCGCGTGGCAAAGGAAGAGCTAGAAAGGGAGG
cacttac putative branch site (score: 17)
cctgtcctttt putative PPT
tcttttttttaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccacggtcacttactttcttgggctcttttttttaaaaacctgtccttttgtagCTTGCTGTAGCGGATTTGACCGAAGCTGCTGCTGTTGCGCCTGACGATGAGACTGTAGCAGACGTCTTGCGCGTGGCAAAGGAAGAGCTAGAAAGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT