1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatctttagcgtttctccttgtaggctttttagttttcctccttttatttctctttcggttgtagcatattgtagtaagcgttgataataatgccttgcagATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTTAAAACTCTGAATGGTGATGACGCTTTGGTTGTTTATGACGAGCTTCTGG
species | Selaginella moellendorffii |
transcript | EFJ23759 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAAGCAGCACAACAGGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAG ATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTTEST: gi|169096279|gb|FE497865.1|FE497865
genomic: ACAAGCAGCACAACAAGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAGgtatatcttt ... tgccttgcagATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTT
EST: ACAAGCAGCACAACAGGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAG ATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTTEST: gi|169080814|gb|FE486646.1|FE486646
genomic: ACAAGCAGCACAACAAGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAGgtatatcttt ... tgccttgcagATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTT
EST: ACAAGCAGCACAACAGGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAG ATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTTEST: gi|169061675|gb|FE469865.1|FE469865
genomic: ACAAGCAGCACAACAAGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAGgtatatcttt ... tgccttgcagATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTT
EST: ACAAGCAGCACAACAAGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAG ATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTT
genomic: ACAAGCAGCACAACAAGCCGGAAGAGATCACAGTAGGCTCCCATGTCGAGgtatatcttt ... tgccttgcagATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTT
atttctctttcggttgtagcatattgtagtaagcgttgataataatgccttgcagATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTTAAAACTCTGAATGGTGATGACGCTTTGGTTGTTTATGACGAGCTTCTGG
cgttgat putative branch site (score: 25)
ttgataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctttagcgtttctccttgtaggctttttagttttcctccttttatttctctttcggttgtagcatattgtagtaagcgttgataataatgccttgcagATTGTTCCAGACGAGGATGGGCTTCAAGGAGTATGGTTCTCAGCCAAGGTTAAAACTCTGAATGGTGATGACGCTTTGGTTGTTTATGACGAGCTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT