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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttataatcttgtagtctgccttcgtgattcataatcttcatccgtgcagGCATTGACTCCTCGAAGTCTGCTATAGACCTTGCGGACGCAAACATCTCTCTCAACAACATAGATCCACAAGTGATTACGTTTGAGAAGGCGGACATTGT

Basic information

species Selaginella moellendorffii
transcript EFJ23330
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169053796|gb|FE461537.1|FE461537
EST:     TGGTGCCTTTGCGCTCAACGCAGCCATCACAGGAGCTTCTCGAGTCATTG                         GCATTGACTCCTCGAAGTCTGCTATAGACCTTGCGGACGCAAACATCTCTC
genomic: TGGTGCCTTTGCGCTCAACGCAGCCATCACAGGAGCTTCTCGAGTCATTGgtaactttat ... atccgtgcagGCATTGACTCCTCGAAGTCTGCTATAGACCTTGCGGACGCAAACATCTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaactttataatcttgtagtctgccttcgtgattcataatcttcatccgtgcagGCATTGACTCCTCGAAGTCTGCTATAGACCTTGCGGACGCAAACATCTCTCTCAACAACATAGATCCACAAGTGATTACGTTTGAGAAGGCGGACATTGT
                                        tcttcatcc  CT-rich tract
     tttataatcttgta  TA-rich tract