1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagttattctttttctttctttgatctttcactaatggtttcttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACGTCGATCTCGTCAGGAGCTTGGGAGCGGACGAAGTTTTGGACTACAAGA
species | Selaginella moellendorffii |
transcript | EFJ23211 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAA CTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACEST: gi|169028776|gb|FE440477.1|FE440477
genomic: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAAgtgagttatt ... ttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAAC
EST: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAA CTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACEST: gi|169088933|gb|FE494445.1|FE494445
genomic: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAAgtgagttatt ... ttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAAC
EST: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAA CTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACEST: gi|169105770|gb|FE508536.1|FE508536
genomic: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAAgtgagttatt ... ttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAAC
EST: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAA CTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACEST: gi|169060545|gb|FE468427.1|FE468427
genomic: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAAgtgagttatt ... ttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAAC
EST: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAA CTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACEST: gi|169115650|gb|FE517860.1|FE517860
genomic: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAAgtgagttatt ... ttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAAC
EST: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAA CTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAAC
genomic: ACGTTCTCATCACTGCTGCCTCTGGTGGCGTGGGTACTTATGCTGTTCAAgtgagttatt ... ttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAAC
gtgagttattctttttctttctttgatctttcactaatggtttcttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACGTCGATCTCGTCAGGAGCTTGGGAGCGGACGAAGTTTTGGACTACAAGA
cactaat putative branch site (score: 40)
tttcttcttatc putative PPT
ttattctttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttattctttttctttctttgatctttcactaatggtttcttcttatcagCTAGCAAAGCTTGCCGGCGCTCACGTCACTGCAACCTGTGGTGCTCGAAACGTCGATCTCGTCAGGAGCTTGGGAGCGGACGAAGTTTTGGACTACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT