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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctatatgtttgacagctaccggagaggaagaacttctaacttatgaactctcttgctttccagGGAGCCATTGGAGAGTTTCGAAAGCCCGACGAGGATGGCCTACACTTGGATTTCTCGTGGCGATTTGGAAATGGAACACTTGGCCTGGTGCTGTCGTTTG

Basic information

species Selaginella moellendorffii
transcript EFJ22813
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169026031|gb|FE435293.1|FE435293
EST:     AAGTTTTTGGAAGTCTCATCGCGCTTCTCTTTATGCAGCAAGCCATCAAG                         GGAGCCATTGGAGAGTTTCGAAAGCCCGACGAGGATGGCCT------GGAT
genomic: AAGTTTTTGGAAGTCTCATCGCGCTTCTCTTTATGCAGCAAGCCATCAAGgtttctatat ... tgctttccagGGAGCCATTGGAGAGTTTCGAAAGCCCGACGAGGATGGCCTACACTTGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacagctaccggagaggaagaacttctaacttatgaactctcttgctttccagGGAGCCATTGGAGAGTTTCGAAAGCCCGACGAGGATGGCCTACACTTGGATTTCTCGTGGCGATTTGGAAATGGAACACTTGGCCTGGTGCTGTCGTTTG
                         ttctaac  putative branch site (score: 1)
                                       ctctcttgctttcc  putative PPT
                            taacttat  TA-rich tract