1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaggcgaacttggttctctgcgtgcttgctaatggtgtcactgcgtccgcagAAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAAGACGAGGAGGAGCACGGTGACACCTTCTGCGGGACCTGCAATGGCCCCT
species | Selaginella moellendorffii |
transcript | EFJ21827 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAAACAAACGGCAACAGCAGCTCCAAAAGGGCTTCTAGTGCGAAATCT AAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAAEST: gi|169059495|gb|FE468521.1|FE468521
genomic: AGAAAACAAACGGCAACAGCAGCTCCAAAAGGGCTTCTAGTGCGAAATCTgtaaggcgaa ... gcgtccgcagAAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAA
EST: AGAAAACAAACGGCAACAGCAGCTCCAAAAGGGCTTCTAGTGCGAAATCT AAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAAEST: gi|169079616|gb|FE488152.1|FE488152
genomic: AGAAAACAAACGGCAACAGCAGCTCCAAAAGGGCTTCTAGTGCGAAATCTgtaaggcgaa ... gcgtccgcagAAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAA
EST: AGAAAACAAACGGCAACAGCAGCTCCAAAAGGGCTTCTAGTGCGAAATCT AAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAA
genomic: AGAAAACAAACGGCAACAGCAGCTCCAAAAGGGCTTCTAGTGCGAAATCTgtaaggcgaa ... gcgtccgcagAAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAA
gtaaggcgaacttggttctctgcgtgcttgctaatggtgtcactgcgtccgcagAAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAAGACGAGGAGGAGCACGGTGACACCTTCTGCGGGACCTGCAATGGCCCCT
tgctaat putative branch site (score: 26)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcgaacttggttctctgcgtgcttgctaatggtgtcactgcgtccgcagAAGAAGCCCCCATCGAGCGACGAGGAGGACGAAGACTCTCCTTACGACGAAGACGAGGAGGAGCACGGTGACACCTTCTGCGGGACCTGCAATGGCCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA